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Browse by Associated Process / Pathway

Top 200 most-frequent process / pathway annotations across the knowledge graph. Click any phrase to see entities + relationships annotated with it.
Note: Phrases are taken verbatim from the per-relationship process/pathway fields and have not been normalized — near-duplicates (e.g. "auxin signaling" vs "auxin signalling pathway") appear as separate rows.
Pathway / Process Relationships
photosynthesis 264527
transcriptional regulation 176851
stress response 125365
gene expression 111874
plant development 100566
root development 93686
auxin signaling 82151
aba signaling 82025
protein localization 77273
protein-protein interaction 74895
drought stress response 69202
salt stress response 68186
gene expression regulation 65592
seed development 64000
leaf development 62209
oxidative stress response 53276
anthocyanin biosynthesis 48672
plant immunity 48490
gene regulation 47373
seed germination 46922
carbohydrate metabolism 45739
ethylene signaling 41597
protein degradation 39039
plant growth 38945
stomatal regulation 37879
plant defense 37554
light signaling 37545
cold stress response 37277
secondary metabolism 36744
antioxidant defense 36327
heat stress response 35982
disease resistance 35956
flower development 34299
pollen development 34127
calcium signaling 33197
meiosis 33079
lipid metabolism 32808
fruit ripening 32598
hormone signaling 32146
protein structure 31644
floral development 31561
photomorphogenesis 30832
protein trafficking 30576
fruit development 30315
gene expression analysis 30260
auxin transport 30023
leaf senescence 28945
flavonoid biosynthesis 28925
carotenoid biosynthesis 27763
water transport 27116
lignin biosynthesis 26909
cell cycle regulation 26438
signal transduction 26370
genetic mapping 26197
flowering time regulation 26165
plant growth and development 25833
brassinosteroid signaling 25599
defense response 24893
autophagy 24744
stomatal development 24177
dna methylation 23794
nitrogen metabolism 23627
amino acid metabolism 23075
ethylene biosynthesis 22935
genome evolution 22894
gibberellin signaling 22884
cytokinin signaling 22301
protein evolution 22029
genome editing 21953
protein phosphorylation 21610
grain development 21531
photoprotection 21302
epigenetic regulation 21113
flowering 21031
starch biosynthesis 20928
meiotic recombination 20882
lateral root development 20849
c4 photosynthesis 20411
photoperiodic flowering 20284
ion transport 20199
reproductive development 20037
cell wall biosynthesis 19446
plant defense response 19146
gene silencing 19129
crop improvement 18913
molecular evolution 18897
anther development 18665
vascular development 18202
photorespiration 18127
evolution 18074
dna damage response 17779
pathogenesis 17741
stress tolerance 17671
jasmonic acid signaling 17634
alternative splicing 17254
oxidative stress 17116
chlorophyll biosynthesis 17049
mirna biogenesis 16737
programmed cell death 16731
salicylic acid signaling 16423
protein synthesis 16211
meristem development 16097
senescence 15931
lipid biosynthesis 15879
iron homeostasis 15652
population genetics 15460
auxin biosynthesis 15287
immune signaling 15258
dna repair 15251
embryogenesis 15212
flowering time control 14618
root hair development 14593
br signaling 14359
cell division 14319
ion homeostasis 14116
osmotic stress response 14095
plant evolution 14013
starch metabolism 13975
jasmonate signaling 13804
cold acclimation 13623
chromatin organization 13620
nodulation 13560
flowering regulation 13524
ja signaling 13519
pollen tube growth 13455
seedling development 13449
cell cycle 13406
plant breeding 13313
water stress response 13191
inflorescence development 13095
stress signaling 13006
genome assembly 12901
abiotic stress response 12859
phosphate starvation response 12805
chromatin remodeling 12773
protein targeting 12709
genetic transformation 12705
drought response 12664
immune response 12581
reproduction 12486
pathogen defense 12416
protein interaction 12344
protein expression 12281
plant-pathogen interaction 12215
comparative genomics 12191
chloroplast development 12179
circadian clock regulation 12150
aba biosynthesis 12113
strigolactone signaling 12013
protein characterization 11962
rna silencing 11921
trichome development 11901
gene expression profiling 11654
redox regulation 11649
gravitropism 11494
cell wall remodeling 11330
post-translational modification 11259
nitrogen fixation 11033
transcriptome analysis 11032
subcellular localization 10992
energy metabolism 10990
genetic engineering 10907
circadian regulation 10885
nodule development 10757
arbuscular mycorrhizal symbiosis 10701
photosynthetic electron transport 10650
nitrogen assimilation 10635
tissue-specific gene expression 10581
protein complex assembly 10486
protein function 10362
rna editing 10344
cell wall composition 10331
respiration 10272
gibberellin biosynthesis 10262
defense signaling 10199
embryo development 10091
protein modification 10063
floral transition 10040
phenylpropanoid metabolism 9928
translation 9860
protein detection 9732
fatty acid biosynthesis 9617
cell growth 9607
endosperm development 9546
genome annotation 9539
nutrient acquisition 9498
ga signaling 9383
domestication 9266
starch synthesis 9265
cellulose biosynthesis 9258
cytokinesis 9203
phloem transport 9201
protein regulation 9196
endocytosis 9156
wound response 9105
mapk signaling 8965
carbon metabolism 8875
shoot development 8875
enzyme catalysis 8873
plant defense signaling 8857