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transcriptional regulation

176851 relationships annotated with this phrase. Showing first 500 of 176851.
Source entity Relationship Target entity Species
(ATNLP1, CPA, NLP1, AT2G27450) and (NLP4, AT1G20640) could not directly activate expression of (anac094, NAC094, AT5G39820) promoter in heterologous system Nicotiana benthamiana
enrichment of (BZR1, AT1G75080) in promoter regions of SE (AtDRB1, DRB1, HYL1, AT1G09700) and (ASU1, ATDCL1, CAF, DCL1, EMB60, EMB76, SIN1, SUS1, AT1G01040) is significantly reduced in (ARP6, ATARP6, ESD1, SUF3, AT3G33520) er-119 (ATXR3, SDG2, AT4G15180) SDG2pro BZR1-YFP Arabidopsis thaliana
(AGL11, STK, AT4G09960) is regulated by HUA-PEP module Arabidopsis thaliana
(ATMYB35, MYB35, TDF1, AT3G28470) is nuclear-localized transcription activator
1168 of 1520 PSI genes are directly bound by OsHMGB1 Oryza sativa
SCARECROW ( (SCR, SGR1, AT3G54220) ) is GRAS family transcription factor Arabidopsis thaliana
three TaHSP70 genes are downstream targets of TaHSFA6e Triticum aestivum
(CBNAC, NTL9, AT4G35580) encodes (CBNAC, NTL9, AT4G35580) (NAC TRANSCRIPTION FACTOR-LIKE 9) Arabidopsis thaliana
DELLA proteins lack DNA-binding domain
MADS domain of PsSOC1 binding to PsCYCD3.3 promoter directly activated PsCYCD3.3 expression Paeonia suffruticosa
MdJAZ2 inhibits MdNAC72-mediated transcriptional activation of MdABI5 Malus domestica
BpMADS11 interacts with BpERF61 promoter Nicotiana tabacum
pairs of BTFs involved in feedback loops (FBLs) significantly regulate specific clusters Arabidopsis thaliana
network is reversible in the first steps consisting of FFLs
WHIRLY1 (ATWHY1, PTAC1, WHY1, AT1G14410) binds to sequence region containing elicitor response element motif-like sequence GNNNAAATT Arabidopsis thaliana
(ABI5, AtABI5, DPBF1, GIA1, AT2G36270) promoter contains (CPD45, FHY3, AT3G22170) /FAR1-binding site (FBS) Arabidopsis thaliana
Mutations in the FBS motif abolishes activation of the LacZ reporter Arabidopsis thaliana
senescence-associated genes (SAGs) contain conserved binding motif for (anac094, NAC094, AT5G39820) Lotus japonicus
(SMR13, AT3G20898) expression is spatially and quantitatively regulated by (At-SCL28, SCL28, AT5G18810) Arabidopsis thaliana
ZmBELL10-bound targets compared with DEGs in zmbell10-1 Zea mays L.
ZmBELL10 might interact with unknown DNA binding cofactors
AtTDF1 and OsTDF1 encode for R2R3 MYB superfamily transcription factor Arabidopsis thaliana; Oryza sativa
OsHMGB1 binds mainly to promoters in vivo, especially near TSS Oryza sativa
GhMYC3 controls expression of GhLBD18 Gossypium hirsutum
TaNAC2-5A inhibited transcriptional repression of TaLBD41-2A on TaNR1.2-6B Triticum aestivum
SbEhd1 directly activates SORGHUM FLOWERING TIME 8 (SbFT8) expression Sorghum bicolor
AT~TATA box, 'Nameless' element and CAAT Box are functional in Ler-0 but not Col-0 Arabidopsis thaliana
MdABI5 binds to MdbHLH3 promoter Malus domestica
(AtEIN3, EIN3, AT3G20770) /EIL family member in Arabidopsis binds and regulates expression of (AtSWEET15, SAG29, SWEET15, AT5G13170) promoter Arabidopsis thaliana
BTFs ( (ATBZIP54, GBF2, AT4G01120) (GBF3, AT2G46270) (ABF3, AtABF3, DPBF5, AT4G34000) (ABI5, AtABI5, DPBF1, GIA1, AT2G36270) (anac032, NAC032, NAC32, AT1G77450) and (ANAC002, ANAC2, ATAF1, AT1G01720) ) raises possibility that BTFs act as co-regulators of (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) -dependent network together with Arabidopsis thaliana
(AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) regulates its GRN indirectly via numerous FBLs established among BTFs and other (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) -dependent genes not bound by Arabidopsis thaliana
Arabidopsis Q-rich domain might affect Mediator complex plasticity Arabidopsis thaliana
protein/DNA-binding bands showed decreasing signal as concentration of cold competitor DNA probes increased
RhNAC100 capable of binding to promoters of RhPIP1;1 and RhPIP2;1
HDAC misregulation could be triggered by compensatory effect for histone deacetylation Arabidopsis thaliana
BABY BOOM1 is member of APETALA2/ETHYLENE-RESPONSIVE ELEMENT-BINDING PROTEIN ( (AP2, AtAP2, FL1, FLO2, AT4G36920) (ATERF13, EREBP, ERF13, AT2G44840) ) family Zea mays
K+-starvation treatment downregulates (SKOR, AT3G02850) from Arabidopsis Arabidopsis thaliana
OsWRKY55 acts as a transcription factor via its WRKY domain Oryza sativa
107 PSI genes were downregulated in mutant but not bound by OsHMGB1, indicating indirect regulation by OsHMGB1 Oryza sativa
SlMPK8 phosphorylates SlERF.C1 rather than affects expression of SlERF.C1 at transcriptional level Solanum lycopersicum
pCalS8::YFPer in pCalS7::icals3m plants fluorescent signal decreased dramatically after 10 μM estradiol induction for 2 d pCalS8::YFPer expression Arabidopsis thaliana
CALLOSE SYNTHASE 8 (ATGSL04, atgsl4, CALS8, GSL04, gsl04, GSL4, AT3G14570) is downstream target of (APP1, AT5G53540) (CBNAC, NTL9, AT4G35580)
SbEhd1 activates SORGHUM FLOWERING TIME 10 (SbFT10) promoter Sorghum bicolor
DELLA proteins generally regulate downstream target genes through DELLA-interacting transcription factors
MdNAC72 directly activates transcription of MdABI5 Malus domestica
MdNAC5 binds to MdNINV6 promoter Malus domestica
MdEIN3.4 directly binds to MdSWEET15a promoter containing (AtEIN3, EIN3, AT3G20770) /EIL binding site Malus domestica
two bands detected in EMSA may correspond to RhNAC100 homodimer-DNA complex (top band) and RhNAC100 monomer-DNA complex (bottom band)
stress response protein gene (GRMZM2G089958_T01) contains eight LBD motifs Zea mays
cotransfection assays using RTCS-GAL4 DNA-binding domain fusion proteins suggested that RTCS acts as a transcriptional activator Zea mays
fact that majority of genes differentially expressed do not contain LBD motifs can most likely be explained by fact that LBD genes are mainly regulatory genes expressed at low levels Zea mays
OsbHLH91 is homologous to OsbHLH92 Oryza sativa
WRKY transcription factors (TFs) are one of the largest families of transcription factors in plants
(AtbZIP16, bZIP16, AT2G35530) primarily functions as transcriptional repressor in dark
ZmBELL10 directly bound to the promoter region of ZmCOBL
electrophoretic mobility shift assays (EMSAs) found that SlERF.C1 indeed bound to the DNA probes containing the GCC box present in the (AtCAPE9, ATPR1, PR 1, PR1, AT2G14610) and PR1a promoters in vitro Solanum lycopersicum
PsPALM1b is Q-type Cys(2)His(2) zinc finger transcription factor Pisum sativum
DELLA proteins have dual functionality as co-repressors enhancing transcription inhibition activity and transcription coactivators
MdNAC72 interacts with MdABI5 Malus domestica
BTF targets were significantly enriched in (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) -dependent -bound and bona fide targets Arabidopsis thaliana
(AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) mainly acts as transcriptional activator
Arabidopsis (ATHSF1, ATHSFA1A, HSF1, HSFA1A, AT4G17750) binds gap-type elements, TTC-rich-type elements, and stress-responsive elements (STREs) Arabidopsis thaliana
(NAI2, AT3G15950) does not have apparent function related to transcriptional regulation Arabidopsis thaliana
(anac094, NAC094, AT5G39820) activates expression of peptide transporter (PTR) Lotus japonicus
(At-SCL28, SCL28, AT5G18810) binds to regulatory sequences close to EXT37 locus Arabidopsis thaliana
RiMsn2 binds to STREs in vitro Rhizophagus irregularis
CLAUSA did not activate expression of SlTCP24 Solanum lycopersicum
recombinant (BZR1, AT1G75080) does not bind to mutated E-box in (AtDRB1, DRB1, HYL1, AT1G09700) promoter Arabidopsis thaliana
OsHMGB1 binds mainly to DNA in promoter region of target genes Oryza sativa
(bHLH, AT5G51780) proteins regulate manifold biochemical processes
GhMYB44 directly binds MYB binding site in GhLBD18 promoter Gossypium hirsutum
GhMYC3 activates expression of GhLBD18 Gossypium hirsutum
downregulated genes in eob2-3 LofTAD are potential direct targets Petunia axillaris
Motif1 resembled MYB binding sites bound by MYB proteins, including (ATMYB119, MYB119, AT5G58850) (AtMYB98, MYB98, AT4G18770) and (ATMYB118, MYB118, PGA37, AT3G27785) Triticum aestivum; Aegilops longissima; Triticum urartu
defence-related genes controlled by PtaMYC2.1 and PtaMYC2.2 encode other transcription factors Populus trichocarpa
TGAATG(A/T)(A/T/C) motif is present in SORGHUM EARLY HEADING DATE 1 (SbEhd1) promoter Sorghum bicolor
(NZZ, SPL, AT4G27330) can specifically bind to Probe 1 from Ler-0 Arabidopsis thaliana
FERm (kinase-dead FERONIA mutant) inhibits activity of (ATMYB63, MYB63, AT1G79180) N Solanum lycopersicum
DELLA proteins and DELLA-interacting transcription factors can prevent from binding to promoters of target genes
PsSOC1 could bind to promoter fragment of PsEBB3 containing CArG motif Paeonia suffruticosa
MdABI5 mediated expression of MdbHLH3 Malus domestica
VP1 and AFL proteins mediate target gene activation by B3 domain-specific binding to Sph/RY motif Arabidopsis thaliana
22 out of 29 genes tested altered following RhNAC100 silencing
OsNF-YA4-GFP binds to all three promoter regions (P1) of OsBiP, OsRD22, and OsSGRL Oryza sativa
SlTCP29 may be essential downstream target of CLAUSA Solanum lycopersicum
DAP-sequencing identified 6979 genes targeted by (AtbZIP68, bZIP68, AT1G32150) Arabidopsis thaliana
ZmBELL10 activated LUC expression
GO term analysis for genes from Cluster A showed enrichment in biological processes related to the transcription process Hordeum vulgare
(ATMYC2, JAI1, JIN1, MYC2, RD22BP1, ZBF1, AT1G32640) controls other transcription factors Populus trichocarpa
SbGhd7 directly represses SORGHUM EARLY HEADING DATE 1 (SbEhd1) promoter activity Sorghum bicolor
three deletions and five SNP sites of lncRNA1 promoter in 'Zhaoshouhong' is important cause of different mRNA level of PpTCP4 and BR content Prunus persica
PpTCP4-MBP binds to probe from P2 fragment containing GGGNCC motif Prunus persica
MdNAC5 directly activates MdTST2 Malus domestica
floral activation complex binds to target gene promoters
(CPD45, FHY3, AT3G22170) and (FAR1, AT5G22500) transcription factors bind to promoter regions containing FBS ( (CPD45, FHY3, AT3G22170) /FAR1-binding site) motif
(CPD45, FHY3, AT3G22170) has numerous putative direct targets in Arabidopsis Arabidopsis thaliana
trimerized transcription factors recruit transcription machineries for gene expression
ASAP complex interacts with (AGD1, VAL1, AT5G61980)
(anac094, NAC094, AT5G39820) binds to promoter regions of genes Lotus japonicus
DNA-binding transcription factor activity emerged at 28 dpi
(ATWRKY75, WRKY75, AT5G13080) could bind to W-box of (ATBZIP60, BZIP60, AT1G42990) promoter Arabidopsis thaliana
GhMYC3 directly activates transcription of GhLBD18 Gossypium hirsutum
RHW1 (Zm00001d018482) could not activate expression of reporter gene in yeast cells Zea mays; Saccharomyces cerevisiae
FTO-mediated m6A demethylation promoted chromatin opening
m6A modifications in peanut were highly correlated with gene expression Arachis hypogaea
PtaMYC2.2 is target of DAP-Seq experiments Populus tremula × alba
PpTCP4 regulates expression of (PPD2, TIFY4B, AT4G14720) Prunus persica
MdABI5 alone activates expression of MdbHLH3 promoter Malus domestica
BpERF61 promoter regions pro-2 and pro-3 contain CArG-box Betula pendula
(FLA, FRI, RSB7, AT4G00650) complex ( -C) includes SUPPRESSOR OF FRI4 (SUF4, AT1G30970) Arabidopsis thaliana
PRC2 targets are over-represented with transcription factors (TFs) Arabidopsis thaliana
SlTCP24 and SlTCP29 directly bind to and activate SlCKX2 Solanum lycopersicum
OsHMGB1 binding peaks occur mostly near TSS Oryza sativa
GhRCD1 affects transcriptional regulation of GhMYC3 on its downstream targets Gossypium hirsutum
tissue-specific expression of DT-A in GR-LhG4/pOp system was used to investigate functional information of (AP2, AtAP2, FL1, FLO2, AT4G36920) /ERF transcription factor DORNRÖSCHEN-LIKE (BOL, DRN-LIKE, DRNL, ESR2, SOB2, AT1G24590) Arabidopsis thaliana
PtTPS16 is one of terpene synthase (TPS) genes directly regulated by (ATMYC2, JAI1, JIN1, MYC2, RD22BP1, ZBF1, AT1G32640) transcription factors Populus trichocarpa
SbEhd1 does not activate SbGhd7 promoter Sorghum bicolor
(ATMYB63, MYB63, AT1G79180) activates transcription of DIR19 Solanum lycopersicum
PsSOC1 protein exhibited specific binding to PsCYCD3.3 promoter Paeonia suffruticosa
NACBS2 binding site plays a role in MdNAC5 activation of MdTST2 promoter Malus domestica
MdNAC5 binds to MdEIN3.4 promoter fragment S2 Malus domestica
phosphorylation of BpMADS11 significantly diminishes regulatory capacity Betula pendula
(AtCAPE9, ATPR1, PR 1, PR1, AT2G14610) gene has been proven to be down-regulated as a result of TILLING mutation in WHY1 (ATWHY1, PTAC1, WHY1, AT1G14410) TILLING mutant Arabidopsis thaliana
absence of (ML3, AT5G23820) in (NAI1, AT2G22770) is result of absence of transcriptional regulation by (NAI1, AT2G22770) Arabidopsis thaliana
several transcription factors were found to be highly expressed in micropylar and chalazal endosperm (MCE) compared with peripheral endosperm (PE) Arabidopsis thaliana
LBD proteins can bind specifically to 5′-GCGGCG-3′ LBD consensus sequence motif in the promoter of target genes
four putative direct target promoters binding of RTCS to LBD motif has been demonstrated for Zea mays
Bt can bind directly to the promoter of Csa1G044870 Cucumis sativus
sphingolipids in the nucleus might participate in transcriptional regulation of UPR genes
RNA polymerase II ( (POL, AT2G46920) II) occupancy is significantly decreased at SE (AtDRB1, DRB1, HYL1, AT1G09700) and (ASU1, ATDCL1, CAF, DCL1, EMB60, EMB76, SIN1, SUS1, AT1G01040) genes Arabidopsis thaliana
(ATMYB35, MYB35, TDF1, AT3G28470) encodes R2R3 MYB tapetum transcription factor Arabidopsis thaliana
eQTL methods used to elucidate underlying transcriptional regulatory networks Populus
BD-VP16-RHW1 construct dramatically represses LUC fluorescence Zea mays
FTO-mediated m6A demethylation promoted transcription activation
(NZZ, SPL, AT4G27330) expression was upregulated in acbp3-2 mutant Arabidopsis thaliana
MADS domain of PsSOC1 could bind to promoter of PsCYCD3.3 Paeonia suffruticosa
BRANCHED1 (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) could control limited number of key regulators Arabidopsis thaliana
in silico analyses (TF2Network tool and Plant Regulomics) predicted BTFs ( (ABI5, AtABI5, DPBF1, GIA1, AT2G36270) (ATBZIP54, GBF2, AT4G01120) (GBF3, AT2G46270) (ABF3, AtABF3, DPBF5, AT4G34000) (ANAC002, ANAC2, ATAF1, AT1G01720) (MYBD, AT1G70000) (ATHB21, HB-2, HB21, AT2G18550) (ATHB40, HB-5, HB40, AT4G36740) (ATHB53, HB-8, HB53, AT5G66700) ) as potential regulators of (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) network Arabidopsis thaliana
some BTFs can modulate transcriptional responses to (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) Nicotiana benthamiana
floral activation complex binding to target gene promoters activates expression of target genes
(ATWRKY53, WRKY53, AT4G23810) self-repression mechanism contrasts to action of AD protein Arabidopsis thaliana
shifted bands detected when GST-RhNAC100-N recombinant protein combined with biotin-labeled DNA probes
ARF34 protein can bind to LBD motif in the rtcs promoter Zea mays
100 RTCS-regulated genes contained between one and 11 LBD motifs within 1 kb upstream of ATG start codon Zea mays
FRIGIDA (FLA, FRI, RSB7, AT4G00650) acts as scaffolding protein for assembly of (FLA, FRI, RSB7, AT4G00650) complex ( -C) Arabidopsis thaliana
formation of distinct transcriptional complexes is another possible mechanism for antagonistic regulation by (ATMYC2, JAI1, JIN1, MYC2, RD22BP1, ZBF1, AT1G32640) and JAMs
expression of histone acetyltransferases (HATs) and histone deacetylases (HDACs) is affected by changes in degree of acetylation Zea mays
100 differentially expressed genes contained LATERAL ORGAN BOUNDARIES domain (LBD) motif Zea mays
genes involved in the responses and tolerance to various stresses encode transcription factors
(PIL1, AT2G46970) and (XTH15, XTR7, AT4G14130) are directly regulated by (PIF1, PIL5, AT2G20180) and (VQ29, AT4G37710) Arabidopsis thaliana
peak B3 is identified in 3′ intergenic region of the FT locus Arabidopsis thaliana
Ehd3 represses Ghd7 transcription Oryza sativa
enrichment at (ATGA2OX1, GA2OX1, AT1G78440) locus in rs1-mum1 shoot apices is similar to enrichment detected in (B73, CHL6, CNX, CNX1, SIR4, AT5G20990) Zea mays
VvABF2 is consistent with function as transcriptional activator Vitis vinifera
(BZIP17, AT2G40950) dysfunction was more defective (BZIP28, AT3G10800) dysfunction Arabidopsis thaliana
ERF17-6 S binds to NYC promoter Malus domestica
CELLULASE6 (AtGH9B18, CEL6, GH9B18, AT4G39010) and MANNANASE7 (AtMAN7, MAN7, AT5G66460) expression in the silique partially depends on INDEHISCENT and ALCATRAZ transcription factors Arabidopsis thaliana
genes that did not respond in cht7 are possibly regulated by cht7 Chlamydomonas reinhardtii
ChIP-qPCR supported evidence of direct binding of MdMYB88 and MdMYB124 to the promoter regions of MdVND6 and MdMYB46 Malus domestica
ANGUSTIFOLIA3 was negative biomarker of transition 1 Vitis vinifera
30-bp unlabeled probes F6, F7, F8, and F9 were used to compete for binding of BdTHX1 Brachypodium distachyon
(ATHSFA2, HSFA2, AT2G26150) is up-regulated (approximately three-fold basal level) in (AT-HSFB1, ATHSF4, HSF4, HSFB1, TBF1, AT4G36990) /B2b mutant plants Arabidopsis thaliana
tomato LpHsfB1 can interact with general factors like (ARQ1, HAC1, AT2G21045) /CBP Solanum lycopersicum
binding/target proteins participate in gene expression
Ca2+/CaM complex modulates DNA-binding activity of transcription factors
CaM-binding protein phosphatase effects modulation of phosphorylation status of TFs
TERMINAL FLOWER 1 (TFL-1, TFL1, AT5G03840) might interact with (AtbZIP, bZIP, AT1G68880) transcription factor Arabidopsis thaliana
(anac094, NAC094, AT5G39820) is homolog of (anac094, NAC094, AT5G39820) Lotus japonicus; Arabidopsis thaliana
binding of AREB/ABFs to (ATXTH18, XTH18, AT4G30280) and (ATCSLC05, ATCSLC5, CSLC05, CSLC5, AT4G31590) was found in Schrenkiella parvula Schrenkiella parvula
(At-SCL28, SCL28, AT5G18810) binds to putative regulatory sequences close to EXT37 locus Arabidopsis thaliana
F-box protein (CYP86A8, LCR, AT2G45970) might target other yet unknown client proteins required in WUS-mediated repression Arabidopsis thaliana
trxG display opposed actions on gene transcription
(bHLH, AT5G51780) protein directly binds to G-box motif Oryza sativa
G-box motif (CACGTG) from 872 to 867 is located upstream of OsBUL1 Oryza sativa
binding of (BZR1, AT1G75080) to SE (AtDRB1, DRB1, HYL1, AT1G09700) and (ASU1, ATDCL1, CAF, DCL1, EMB60, EMB76, SIN1, SUS1, AT1G01040) is dependent on SWR1-SDG2-ERECTA module signaling Arabidopsis thaliana
ChIP-seq analysis of ZmBELL10 detected 2952 peaks corresponding to putative ZmBELL10-bound sites Zea mays L.
ZmBELL10 was mainly enriched in the region around transcription start sites (TSSs) of target loci
(ATMYB35, MYB35, TDF1, AT3G28470) does not have sole regulation as observed in Arabidopsis Hordeum vulgare; Arabidopsis thaliana
GhMYC3 regulates GhLBD18 expression indirectly via GhMYB44-GhLBD18 transcriptional cascade Gossypium hirsutum
1043 DEGs between OE#1 and wild-type were identified between OE#1 and wild-type plants Zea mays
RMD SG19 bind DNA through recognition of particular cis-element targets ([G/A]TT[A/T]GG[T/C])
EOB2 induces EOB1 expression
SlERF.C1 directly binds to promoters of (AtCAPE9, ATPR1, PR 1, PR1, AT2G14610) and PR1a Solanum lycopersicum
OsGhd7 is hypothesized to repress OsEhd1 through protein complex formation instead of direct promoter binding Oryza sativa
EMSA experiments using recombinant (NZZ, SPL, AT4G27330) protein investigated potential interaction of (NZZ, SPL, AT4G27330) with 5′-flanking regions of (ACBP3, AT4G24230) Arabidopsis thaliana
absence of multiple TA-repeats facilitated effective binding of (NZZ, SPL, AT4G27330) to the AT~TATA box on the (ACBP3, AT4G24230) promoter in Ler-0 Arabidopsis thaliana
GST-MYB63 N directly binds to SMRE9 (ACCTAAA) in DIR19 promoter Solanum lycopersicum
co-infection of PsRGL1 and PsSOC1 decreased binding of PsSOC1 to PsCYCD3.3 promoter Paeonia suffruticosa
MdNAC5 enhances MdEIN3.4 promoter activity Malus domestica
BRANCHED1 (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) encodes TEOSINTE BRANCHED1, CYCLOIDEA, PCF (TCP) transcription factor Arabidopsis thaliana
DOWN clusters was not significantly targeted by any BTF Arabidopsis thaliana
(ATWHY1, PTAC1, WHY1, AT1G14410) overexpression plants show no obvious alteration in transcript level of most PR genes Arabidopsis thaliana
chromatin immunoprecipitation (ChIP) assay performed using mesophyll protoplasts of transgenic Arabidopsis plants Arabidopsis thaliana
other classes induced by testa rupture in micropylar and chalazal endosperm (MCE) include genes related to biotic stress, hormone metabolism, regulation of transcription, signaling (receptor kinases), and transport Arabidopsis thaliana
(ELF7, AT1G79730) (EARLY FLOWERING 7) is component of the RNA polymerase II-associated factor 1 (PAF1) complex Arabidopsis thaliana
GFP showed no binding to any promoter region Oryza sativa
(anac094, NAC094, AT5G39820) activates expression of cysteine protease 3 (CYP3) Lotus japonicus
leaf angle in rice is controlled by interaction of several helix–loop–helix (HLH) transcription factors Oryza sativa
(At-SCL28, SCL28, AT5G18810) directly regulates EXT37 Arabidopsis thaliana
natural variation from Glu in (ATWRKY52, RRS1, RRS1-R, SLH1, AT5G45260) C to Lys in T changed transcriptional activation activity of (ATWRKY52, RRS1, RRS1-R, SLH1, AT5G45260)
LOC_Os09g32510 is OsbHLH92 Oryza sativa
SbGhd7 does not show binding peaks or transcriptional repression in SORGHUM FLOWERING TIME 1 (SbFT1) promoter Sorghum bicolor
TGAATG(A/T)(A/T/C) sequence is widely present in promoter of SbEhd1 Sorghum bicolor
DELLA proteins and DELLA-interacting transcription factors can repress transcriptional activity
ChIP-seq analysis identified 4339 loci containing (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) peaks within 3-kb upstream of TSS Arabidopsis thaliana
(ATWHY1, PTAC1, WHY1, AT1G14410) target genes were proposed based on occurrence of ERE sequences in their promoters Arabidopsis thaliana
MEDIATOR25 (MED25, PFT1, AT1G25540) is a subunit of Arabidopsis Mediator complex Arabidopsis thaliana
DNA-binding domains mediate binding to conserved heat shock cis-elements
OsWRKY55 has the key motif WRKYGEF Oryza sativa
OsNF-YA4-IR1 and OsWRKY55-IR activate the reporter gene in yeast (Saccharomyces cerevisiae) system Saccharomyces cerevisiae
direct binding of (BZR1, AT1G75080) to promoters of SE (AtDRB1, DRB1, HYL1, AT1G09700) and (ASU1, ATDCL1, CAF, DCL1, EMB60, EMB76, SIN1, SUS1, AT1G01040) is dependent on SWR1-SDG2-ER signaling module Arabidopsis thaliana
ZmBELL10 directly bound to cell division- and cell elongation-related genes
genes with higher basal expression levels are associated with stronger OsHMGB1 binding Oryza sativa
four PIF quartet members regulate target genes differently besides co-regulated genes Arabidopsis thaliana
downregulated gene promoters in eob2 mutants displayed significant enrichment of SG19 binding site matrices Petunia axillaris
upregulated genes in eob2-3 LofTAD did not have enrichment of SG19 binding sites Petunia axillaris
nitrate is signal that triggers complex regulation of transcriptional networks
Cys(2)His(2)-zinc finger transcription factors named PALM1 and MULTI-PINNATE LEAF1 (MPL1) bind to promoters of CaLEAFY (CaLFY) Cicer arietinum
MdNAC5 binds to promoter of MdEIN3.4 Malus domestica
zinc finger protein gene (AtC3H61, AtTZF5, TZF5, AT5G44260) is BRC1-targeted transcription factor (BTF) Arabidopsis thaliana
(AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) and BTF ( (ABI5, AtABI5, DPBF1, GIA1, AT2G36270) (anac032, NAC032, NAC32, AT1G77450) (ANAC002, ANAC2, ATAF1, AT1G01720) (ATHB21, HB-2, HB21, AT2G18550) (ATHB40, HB-5, HB40, AT4G36740) (ATHB53, HB-8, HB53, AT5G66700) and (ATBZIP54, GBF2, AT4G01120) ) regulate common target gene sets Arabidopsis thaliana
basic helix loop helix transcription factor (bHLH129, AT2G43140) is transcriptional regulator in cluster 2 Arabidopsis thaliana
(ATWHY1, PTAC1, WHY1, AT1G14410) binds to (ATWRKY53, WRKY53, AT4G23810) promoter Arabidopsis thaliana
Lateral Organ Boundaries (LOB) proteins recognize specific 5′-GCGGCG-3′ DNA consensus sequence
RTCS can bind to LBD promoter element of arf34 Zea mays
(VUP1, AT3G21710) may antagonize the action of one or more transcription factors Arabidopsis thaliana
G-box motif is found in the promoter regions of (PIL1, AT2G46970) and (XTH15, XTR7, AT4G14130) Arabidopsis thaliana
expression of (At-SCL28, SCL28, AT5G18810) might result from activity of other transcriptional regulators in transition and elongation zones Arabidopsis thaliana
tapetum transcriptional control involves multiple feedback loops
GhMYC3 and GhRCD1 co-expression alleviates inhibition of GhMYB44 expression by GhMYC3 Gossypium hirsutum
(MYC3, AT5G46760) proteins could bind to G-box cis-elements in multiple species Arabidopsis thaliana; Solanum lycopersicum
targets identified in the literature were directly activated by R2R3-MYB SG19 members
3 of 20 MYC2-transcriptional core genes are targeted exclusively by PtaMYC2.2 only Populus tremula × alba
pS17::GFPer in pCalS7::icals3m roots did not observed effects on expression by estradiol treatment Arabidopsis thaliana
altered binding efficiency of the transcription factor (NZZ, SPL, AT4G27330) to the AT~TATA Box in the 5′-flanking region of (ACBP3, AT4G24230) in Ler-0 activated transcription of (ACBP3, AT4G24230) in Ler-0 anthers Arabidopsis thaliana
Long terminal repeat retroelements (LTR-REs) concomitantly alter transcriptional competence Phyllostachys edulis
BTFs fine-tune transcriptional responses in cooperation with (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) Arabidopsis thaliana
(AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) GRN is also enriched in multi-output FBLs
(MED8, AT2G03070) is transcriptional regulator Phaeodactylum tricornutum
promoters of both strong oscillators and modest oscillators are enriched with MYB binding motif
RhCesA2 is direct downstream target gene of RhNAC100
(At-SCL28, SCL28, AT5G18810) is added to list of complex gene regulation mechanisms in transition zone Arabidopsis thaliana
SlTCP24 activates SlCKX2 promoter Solanum lycopersicum
local histone H3 acetylation enhanced gene transcription
(AtbZIP, bZIP, AT1G68880) protein binding specificity to DNA is a result of variations of the cis-element and its flanking nucleotides Arabidopsis thaliana
ZmBELL10 has highest occupancy near transcription start site regions Zea mays L.
OsHMGB1 binding to promoters of OsHMGB1, OsGDPD5, OsRNS3, OsVPE2 and (ABCE1, ATRLI1, RLI1, AT3G13640) was verified by ChIP-qPCR Oryza sativa
NIN (Nodule Inception) and NIN-like protein (NLP) transcription factors regulate Lb gene expression
hypomethylated promoters showed significantly enriched binding sites for MYB
PtaMYC2.1 peaks are located in promoter regions Populus tremula × alba
PpTCP4 directly binds to (PPD2, TIFY4B, AT4G14720) promoter via GGGNCC (GGNCCC) motif Prunus persica
PALM1 and MULTI-PINNATE LEAF1 (MPL1) binding to promoters represses SGL1 expression Medicago truncatula
PsSOC1 directly binds to CArG motif of PsCYCD3.3 promoter Paeonia suffruticosa
MdJAZ2 weakened transcriptional activation on MdABI5 by MdNAC72 Malus domestica
nuclear At CCoAOMT has potential to influence nuclear localization and function of (bHLH010, AT2G31220) and (bHLH089, AT1G06170) Arabidopsis thaliana
MdNAC5 activation on P3 promoter fragment is reduced by 42% compared to P2 promoter fragment Malus domestica
(ATWRKY53, WRKY53, AT4G23810) promoter with m0 mutation (ERE motif) shows increased GUS activity independent of (ATWHY1, PTAC1, WHY1, AT1G14410) presence Nicotiana tabacum
(ATWHY1, PTAC1, WHY1, AT1G14410) could bind to promoters of (ATWRKY53, WRKY53, AT4G23810) Arabidopsis thaliana
(ATWHY1, PTAC1, WHY1, AT1G14410) could bind to promoters of other WRKY members Arabidopsis thaliana
SPX domain protein3 negatively regulates PHT1;1 transcription Arabidopsis thaliana
miRNA156 target (SPL11, AT1G27360) appears on both SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (AGL22, FAQ1, SVP, AT2G22540) and AGAMOUS-LIKE 15 (AGL15, AT5G13790) target lists Arabidopsis thaliana
MYB4-like transcription factor family members have been characterized as transcriptional repressors
SNAC1-overexpressing plants up-regulates expression of OsPP18 Oryza sativa
Ghd7 has no transactivation activity in plant cell Arabidopsis thaliana
(AtSIP1, RS1, SIP1, AT1G55740) fused to activation domain of VP16 induced 5-fold increase of firefly luciferase (FiLuc) activity Nicotiana benthamiana
KNOX binding to (ATGA2OX1, GA2OX1, AT1G78440) gene indicates that this target is shared with other KNOX proteins Zea mays
(ANAC013, ANAC13, NAC13, AT1G32870) (Arabidopsis NAC transcription factor13) binds to specific cis-elements within the (AOX1A, ATAOX1A, AtHSR3, HSR3, AT3G22370) promoter region Arabidopsis thaliana
(ABO3, ATWRKY63, WRKY63, AT1G66600) binds to specific cis-elements within the (AOX1A, ATAOX1A, AtHSR3, HSR3, AT3G22370) promoter region Arabidopsis thaliana
(PXY, TDR, AT5G61480) directly binds (ACO4, EAT1, EFE, AT1G05010) promoter Oryza sativa
SlNAP1 and SlNAP2 share similar binding sequence specificities to TaNAC69 Solanum lycopersicum; Triticum aestivum
ZmAN3 binds to ZmGRF3 and ZmGRF17 Zea mays
IDS1-TPR1 association may depend on IDS1 EAR motif Oryza sativa
transcription initiation requires assembly of preinitiation complex
active transcription requires highly phosphorylated CTD with Ser-2 and Ser-5 positions
MYB proteins are one of the largest transcription factor families in Arabidopsis Arabidopsis thaliana
YFP fused to phosphate translocator presequence and envelope-targeting domain is under the control of CaMV 35S promoter
upregulated miR394-triggered differentially expressed genes (DEGs) are not significantly enriched for WUSCHEL (PGA6, WUS, WUS1, AT2G17950) binding loci Arabidopsis thaliana
OsbHLH92 contains (bHLH, AT5G51780) domain Oryza sativa
LAM1 may act as transcription factor Oryza sativa
LAM1 regulates expression of OsBU1 and OsBU1 homologs Oryza sativa
(BZR1, AT1G75080) is enriched at E-boxes in promoter regions of SE (AtDRB1, DRB1, HYL1, AT1G09700) and (ASU1, ATDCL1, CAF, DCL1, EMB60, EMB76, SIN1, SUS1, AT1G01040) Arabidopsis thaliana
EOB2 must be major activator of EOB1
TaNAC2 and TaLBD41 exhibited regulatory activity on TaNADH-GOGAT expression Triticum aestivum
PtaMYC2.1 is target of DAP-Seq experiments Populus tremula × alba
PtaMYC2.1 and PtaMYC2.2 peaks match G-box-like motifs Populus tremula × alba
promoter sequences of the six PR genes were analyzed for cis-elements Solanum lycopersicum
PpTCP4 decreases activity of (PPD2, TIFY4B, AT4G14720) promoter Prunus persica
PALM1 and MULTI-PINNATE LEAF1 (MPL1) binding to promoters represses CaLFY expression Cicer arietinum
PsSOC1 directly binds to CArG motif of PsEBB3 promoter Paeonia suffruticosa
interaction of PsRGL1-PsSOC1 abolished DNA-binding ability of PsSOC1
EBB3 in poplar directly activates the expression of CYCD3.1 by binding GCC-box-like motif of its promoter Populus
MdNAC72 and MdABI5 enhance activation of MdbHLH3 promoter Malus domestica
MdNAC72 directly binds to and stimulates expression of MdABI5 promoter Malus domestica
(AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) targets encoding transcription factors (BTFs) play critical roles in the regulation of the network Arabidopsis thaliana
bona fide (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) direct target genes enriched in regulation of transcription Arabidopsis thaliana
(ATMYC2, JAI1, JIN1, MYC2, RD22BP1, ZBF1, AT1G32640) preferentially binds to G-box-related sequences
OsNF-YA4-IR1 and OsWRKY55-IR proteins showed transcriptional activities similar to or higher than their respective full-length proteins Saccharomyces cerevisiae
GmENOD40 expression changes is as expected downstream target of transcriptional repressor GmNNC1 Glycine max
Interaction between ZmBELL5 and ZmBELL10 enhanced DNA binding activity Zea mays L.
(ATMYB35, MYB35, TDF1, AT3G28470) directly activates osmotin proteins
HvTDF1 directly activates HvAMS Hordeum vulgare
(ATMYB35, MYB35, TDF1, AT3G28470) can directly activate (AMS, AT2G16910) suggests these two proteins share conserved functions Hordeum vulgare; Arabidopsis thaliana
24-amino acid region of (PAP3, PIF3, POC1, AT1G09530) containing FVPWL motif was reported as p53-like AD Arabidopsis thaliana
LBDs have putative binding sites in promoter regions of NPF/ (AtNPF6.3, ATNRT1, B-1, CHL1, CHL1-1, NPF6.3, NRT1, NRT1.1, AT1G12110) (ACH1, ATNRT2.1, ATNRT2:1, LIN1, NRT2, NRT2.1, NRT2:1, NRT2;1AT, AT1G08090) NR, (ATHNIR, NIR, NIR1, AT2G15620) GS, and GOGAT genes Triticum aestivum
promoter DBSs of PtaMYC2.1 and PtaMYC2.2 show enriched functions related to DNA binding and transcriptional regulation Populus tremula × alba
3 of 12 TPS genes are directly regulated by PtaMYC2 transcription factors Populus tremula × alba
ERF family members binds GCC box cis-acting element
NAC and WRKY transcription factors have been implicated in transcriptional regulation of DIR family genes
heat shock transcription factor PtHSF1 of P. tricornutum can bind to TTC-rich region of promoters of (ATGPAT3, GPAT3, AT4G01950) and (AtCLA1, CLA, CLA1, DEF, DXPS2, DXS, DXS1, AT4G15560) Phaeodactylum tricornutum
H3K4 trimethylation is one of histone modifications deposited on nucleosomes at promoter Arabidopsis thaliana
(ML3, AT5G23820) is transcription target downstream from (NAI1, AT2G22770) Arabidopsis thaliana
(AtHDA7, HDA7, AT5G35600) promoter motif composition suggests (AtHDA7, HDA7, AT5G35600) transcription is regulated in a complex way Arabidopsis thaliana
promoters of RiAQP-2, RiNTH1, RiNTH2, RiTPS-1, RiTSP-2, and Ri14-3-3 from Rhizophagus irregularis contain conservative STREs Rhizophagus irregularis
SlTCP24 directly binds to TCP-binding site 1 of SlCKX2 promoter Solanum lycopersicum
genetic pathways and genes that show downregulated in both developmental stages are potential direct targets of HvTDF1 Hordeum vulgare
integrated ChIP–seq and RNA–seq analysis of the four PIF quartet members documented similar observation that four PIF quartet members regulate target genes differently Arabidopsis thaliana
SbGhd7 specifically binds to TGAATG(A/T)(A/T/C) DNA motif Sorghum bicolor
AT nucleotides in TGAATG(A/T)(A/T/C) motif is critical for SbGhd7-DNA binding Sorghum bicolor
phosphorylation is one of histone modifications deposited on nucleosomes at promoter Arabidopsis thaliana
(ATHD1, ATHDA19, HD1, HDA1, HDA19, HDAC19, RPD3A, AT4G38130) controls 11% of transcriptome in leaf Arabidopsis thaliana
ATP-binding protein gene (GRMZM2G339203_T01) contains 11 LBD motifs Zea mays
OsWRKY55-IR-GFP is associated with the OsGUN4 and OsRD22 promoters, but not with the OsSGRL promoter Oryza sativa
(ANAC008, SOG1, AT1G25580) binds to promoter of DDRM2 Arabidopsis thaliana
Most MYB proteins belong to R2R3-MYB subfamily
LAM1 colocalizes with OsMADS3 Oryza sativa
expression of SE (AtDRB1, DRB1, HYL1, AT1G09700) and (ASU1, ATDCL1, CAF, DCL1, EMB60, EMB76, SIN1, SUS1, AT1G01040) genes is activated by (BZR1, AT1G75080) family of transcription factors Arabidopsis thaliana
(AtbZIP16, bZIP16, AT2G35530) C330L is active DNA binding form
interacting ZmBELL proteins recognize the same DNA sequences Zea mays
key residues in the POX domain of ZmBELL10 do not affect transactivation activity Zea mays
GhMYB44 and GhMYC3 co-expression leads to significantly higher levels of LUC expression driven by GhLBD18 promoter Gossypium hirsutum
RHW1 (Zm00001d018482) acts as a positive effector of ZCN4 expression Zea mays
overexpression of TaLBD41-2A decreased expression of TaNADH-GOGAT-3B Triticum aestivum
SlERF.C1 activated transcription of PR genes Solanum lycopersicum
TGAATG(A/T)(A/T/C) motif is present in FLAVIN-BINDING, KELCH REPEAT, F-BOX1 (SbFKF1) promoter Sorghum bicolor
VmPR1c-mediated inhibition of MdVQ29-MdWRKY23 interaction leads to downregulation of MdCOI1 Malus domestica
MdTST2 promoter-luciferase construct displays significant upregulation of activity when co-expressed with 35S:MdNAC5 Malus domestica
MdNAC5 binds to MdNINV6 promoter fragment S2 containing NACBS Malus domestica
MdNAC5 does not directly activate MdSWEET15a promoter Malus domestica
MdEIN3.4 binds to MdSWEET15a promoter Malus domestica
BpERF61 binds to TTGGAT motif Betula pendula
BACGTGKC motif closely resembles G-box (CACGTG) Arabidopsis thaliana
G-box-like motif was not reported in recently published ChIP-Seq experiment for maize TB1 Zea mays
heat shock transcription factors in P. tricornutum may bind to elements other than HSEs Phaeodactylum tricornutum
WHIRLY1 (ATWHY1, PTAC1, WHY1, AT1G14410) represses expression of β-glucuronidase gene Arabidopsis thaliana
(NAI1, AT2G22770) may regulate (ML3, AT5G23820) gene expression Arabidopsis thaliana
galactosyltransferase (GRMZM2G181358_T01) contains two LBD motifs Zea mays
transactivation assay confirms (anac094, NAC094, AT5G39820) targeting genes Lotus japonicus
MYB proteins can be classified into R2R3-MYB subfamily
RiMsn2-MBP protein can bind to STRE elements in promoters of drought-responsive genes Rhizophagus irregularis
WRKY transcription factors (TFs) can bind to DNA at W-box
(ATWRKY75, WRKY75, AT5G13080) may also bind to W-box of UPR genes' promoters Arabidopsis thaliana
POX and HOM domains of ZmBELL10 were necessary for transactivation activity
(ATMYB35, MYB35, TDF1, AT3G28470) genes encode for R2R3 MYB family transcription factors Arabidopsis thaliana; Oryza sativa
GhRCD1-inhibited GhMYC3 regulates expression of GhMYB44 and GhLBD18 Gossypium hirsutum
TaLBD41-2A and TaNAC2-5A heterologous protein complex binding signal could not be detected to downstream gene promoter Triticum aestivum
GST-MYB63 N directly binds to SMRE3 (ACCAAAC) in DIR19 promoter Solanum lycopersicum
MdABI5 promoter contains CACG motif Malus domestica
(AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) peaks located in proximal upstream region of protein-coding genes, predominantly within 300 bp of TSS Arabidopsis thaliana
AAAT of the AT-rich region are crucial for DNA-binding activity of (ATWHY1, PTAC1, WHY1, AT1G14410) Arabidopsis thaliana
OsNF-YA4 and OsWRKY55 showed transcriptional activity 20- and 10-fold higher, respectively, than that of the empty vector (negative control) Saccharomyces cerevisiae
repressed miR394-triggered differentially expressed genes (DEGs) enrichment for WUSCHEL (PGA6, WUS, WUS1, AT2G17950) binding loci suggests novel role of miR394 in expanding the group of genes directly transcriptionally repressed by WUSCHEL (PGA6, WUS, WUS1, AT2G17950) Arabidopsis thaliana
UNUSUAL FLORAL ORGANS (UFO) acts as transcriptional cofactor
sphingolipids in the nucleus may affect the activity of (ATWRKY75, WRKY75, AT5G13080) Arabidopsis thaliana
(AtbZIP, bZIP, AT1G68880) protein binding specificity to DNA is a result of variability of the binding region of the protein Arabidopsis thaliana
HvTDF1 protein activates gene expression by modified dual-luciferase reporter (DLR) assay Hordeum vulgare
upregulation of MYBs may have potential connection with hypomethylation of their binding sites Triticum aestivum; Aegilops longissima; Triticum urartu
BRC1NET enrichment analysis tool discovered BTFs could preferentially regulate specific BRC1-dependent clusters Arabidopsis thaliana
(ATWRKY53, WRKY53, AT4G23810) promoter contains ERE motif Arabidopsis thaliana
(ATHSFA2, HSFA2, AT2G26150) preferentially targets subset of genes with different physiological functions from HSFA1-preferring genes Arabidopsis thaliana
abscisic acid (ABA) treatment downregulates (SKOR, AT3G02850) from tomato Solanum lycopersicum
DNA-Affinity Purification Sequencing identifies (anac094, NAC094, AT5G39820) targeting genes Lotus japonicus
transcription factors (TFs) strictly control differentiation and expansion of cells
OsHMGB1 is transcriptional facilitator Oryza sativa
OsHMGB1 occupancy in OsHMGB1-regulated genes is higher in those not regulated by OsHMGB1 Oryza sativa
auxin-related DEGs have at least one putative YAB-binding motif in their promoters Setaria viridis
MYB binding site mutation in GhLBD18 promoter abolishes GhMYB44 interaction with GhLBD18 promoter Gossypium hirsutum
promoter sequence of GhLBD18 contains multiple G-box cis-elements Gossypium hirsutum; Citrus sinensis; Glycine max; Triticum aestivum; Oryza sativa; Arabidopsis thaliana
RHW1 (Zm00001d018482) may function as transcriptional repressor Zea mays
Apetala 2/Ethylene Response Factor ( (AP2, AtAP2, FL1, FLO2, AT4G36920) /ERF) (Potri.005G223200) is targeted by PtaMYC2 transcription factors Populus tremula × alba
knockout mutations in each (ATIRE1-1, AtIRE1b, IRE1, IRE1-1, IRE1B, AT5G24360) gene hamper bZIP60-induced gene expression Arabidopsis thaliana
FERONIA (FER, AT3G51550) interacts with transcription factor (ATMYB63, MYB63, AT1G79180) Solanum lycopersicum
MADS-box proteins can recognize and bind to CArG motif of target genes
CArG motif in PsCYCD3.3 promoter suggested that PsSOC1 could act upstream of PsCYCD3.3 to regulate its expression Paeonia suffruticosa
MdEIN3.4 acts as bridge between MdNAC5 and MdSWEET15a Malus domestica
(ATHB40, HB-5, HB40, AT4G36740) is direct (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) target Arabidopsis thaliana
WHIRLY1 (ATWHY1, PTAC1, WHY1, AT1G14410) binds to sequence region containing AT-rich telomeric repeat-like sequence Arabidopsis thaliana
WHY1-HA protein binding to SPO11 promoter is abundantly detected at 9-week-old stage under 16-h illumination Arabidopsis thaliana
(ATWHY1, PTAC1, WHY1, AT1G14410) could bind to promoters of at least 30 downstream target genes Arabidopsis thaliana
MYB binding site is present in promoter of SlTCP29 Solanum lycopersicum
ZmBELL10 and other ZmBELL proteins may associate together and have similar functions Zea mays L.
modified dual-luciferase assay was used to study transcriptional activator role of the HvTDF1 protein Nicotiana benthamiana
OsHMGB1 binds extensively to promoters Oryza sativa
single-cell genomics provides insights into transcriptional regulators
GhMYC3 contains conserved bHLH-MYC_N domain Gossypium hirsutum
downregulated genes in eob2-3 LofTAD had significant enrichment of promoters with SG19 binding sites Petunia axillaris
(AtCAPE9, ATPR1, PR 1, PR1, AT2G14610) and PR1a promoter fragments containing GCC box or (DER, emb2738, EngA-1, AT3G12080) /CRT cis-elements were precipitated and highly enriched from SlERF.C1-FLAG-expressing fruits at Br + 7 stage by an anti-FLAG antibody Solanum lycopersicum
SbGhd7 binds to TGAATG(A/T)(A/T/C) sequence Sorghum bicolor
interactions of DELLA proteins with FLOWERING LOCUS C (AGL25, FLC, FLF, RSB6, AT5G10140) PIF, SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (NZZ, SPL, AT4G27330) and (GAI, RGA2, AT1G14920) ASSOCIATED FACTOR 1 (GAF1) can indirectly regulate (AGL20, ATSOC1, SOC1, AT2G45660) expression Arabidopsis thaliana
MdJAZ2 disrupts MdNAC72 transcriptional activation of MdABI5 Malus domestica
JA signaling repressor MdJAZ2 weakens MdNAC72 transcriptional activation of MdABI5 Malus domestica
HD-Zip genes (ATHB21, HB-2, HB21, AT2G18550) (ATHB40, HB-5, HB40, AT4G36740) and (ATHB53, HB-8, HB53, AT5G66700) are BRC1-targeted transcription factors (BTFs) Arabidopsis thaliana
transcriptomic and (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) ChIP-Seq data identified bona fide (AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) direct targets
calcium-binding elongation factor hand family protein (AT5G54130) is transcriptional regulator in cluster 2 Arabidopsis thaliana
19 out of 22 genes with altered expression exhibited inverse expression patterns compared with homologs in RhNAC100m-ox/Col Arabidopsis plants
(anac094, NAC094, AT5G39820) activates expression of COPPER TRANSPORTER (COPT) Lotus japonicus
(ANAC008, SOG1, AT1G25580) activates expression of DDRM2 Arabidopsis thaliana
LEAFY binds to novel cis-elements
E-box motif (CAAGTG) from 1608 to 1603 is located upstream of OsBU1 Oryza sativa
ZmBELL10 failed to bind to mutated sequence Zea mays L.
putative barley orthologous genes of ABORTED MICROSPORES and (AtMYB103, ATMYB80, MS188, MYB103, MYB80, AT5G56110) also showed downregulated in HvTDF1 Hordeum vulgare
plant immune systems regulate gene expression
promoter region of TaLBD41 contained putative NAC-binding site Triticum aestivum
TaNAC2 binds to TaLBD41 promoter Triticum aestivum
SbGhd7 DNA-binding domain does not bind to mutated DNA probe with AT replaced by GG Sorghum bicolor
SbEhd1 directly activates SORGHUM FLOWERING TIME 10 (SbFT10) expression Sorghum bicolor
NACBS3 binding site is involved in MdNAC5 activation of MdTST2 promoter Malus domestica
MdNAC5 binds to MdTST2 promoter fragments S2 and S3 Malus domestica
MdSWEET12a expression unaffected by MdNAC5 Malus domestica
BpERF61 could bind to different motifs to regulate downstream gene expression Betula pendula
GDCCCA motif closely resembles TCP-binding site Arabidopsis thaliana
BRC1-dependent gene clusters shows enrichment in BRC1-bound and DEG genes
(AtBRC1, ATTCP18, BRC1, TCP18, AT3G18550) expression is sufficient to activate BTFs and their downstream targets
Mediator subunits are always recruited by transcription factors
(ATHSF3, ATHSFA1B, HSF3, HSFA1B, AT5G16820) works as transcriptional activator Phaeodactylum tricornutum
RhPIP1;1 promoter contains CGTG
promoter fragments containing core sequence of RhCesA2, RhPIP1;1, and RhPIP2;1 enriched in ChIP assay Arabidopsis thaliana
(NAI2, AT3G15950) is proposed (NAI1, AT2G22770) target gene Arabidopsis thaliana
(ATMYC2, JAI1, JIN1, MYC2, RD22BP1, ZBF1, AT1G32640) binds to G-box sequence on (ATMYC2, JAI1, JIN1, MYC2, RD22BP1, ZBF1, AT1G32640) promoter
AtRPL10B may also have extraribosomal activities as regulator of transcription in nucleus Arabidopsis thaliana
(ATWRKY75, WRKY75, AT5G13080) positively regulates PHT1;1 transcription Arabidopsis thaliana
TEMPRANILLO1 appears on both SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (AGL22, FAQ1, SVP, AT2G22540) and AGAMOUS-LIKE 15 (AGL15, AT5G13790) target lists Arabidopsis thaliana
(HLH1, PAR1, AT2G42870) acts as dominant-negative antagonist of (AtPIF4, PIF4, SRL2, AT2G43010) by heterodimerizing with and preventing it from binding to DNA Arabidopsis thaliana
(AtSIP1, RS1, SIP1, AT1G55740) also binds KN1 targets Zea mays
KN1 (KNOTTED1) contributes to regulation of 643 genes Zea mays
(GL2, AT1G79840) has been shown to be positively regulated by (ATMYB23, ATMYBRTF, MYB23, AT5G40330) and (ATTTG1, TTG, TTG1, URM23, AT5G24520)
RNA-seq analysis of four double mutant plants: 17/28, 17/60, 28/60, and (ATS1P, ATSBT6.1, S1P, AT5G19660) /2p conducted to dissect target genes of (AtbZIP, bZIP, AT1G68880) transcription factors Arabidopsis thaliana
ELONGATED HYPOCOTYL 5 (HY5, TED 5, AT5G11260) directly binds to promoter regions of (ATCHS, CHS, TT4, AT5G13930) (A11, AtCHI, CFI, CHI, TT5, AT3G55120) and (F3'H, F3H, TT6, AT3G51240) Arabidopsis thaliana
SNPs in GmINS1 suggest variation of GmINS1 effects on nodule growth and development among RILs might be related to differences in regulation of its expression
probes F8 and F9 showed competition with biotin-labeled F5 Brachypodium distachyon
EAR motif can recruit (ATSAP18, SAP18, AT2G45640) Arabidopsis thaliana
EAR motif is responsible for repression of target gene expression
heat shock factor (HSF) binds to DNA
YHB–D and YHB–Rc50 share SSTF-regulated genes
(ATHB52, HB52, AT5G53980) is Rc-repressed gene in Class-1
GI is Class-2 gene
cis-regulatory elements in phas promoter contribute to driving high levels of expression of phas in different regions of embryo Phaseolus vulgaris
di-methylation of lysine 36 of histone 3 (H3K36me2) is correlated with high (AGL25, FLC, FLF, RSB6, AT5G10140) expression Arabidopsis thaliana
(anac094, NAC094, AT5G39820) activates expression of lysozyme (LYS) Lotus japonicus
(At-SCL28, SCL28, AT5G18810) gene regulatory network requires further study at spatial-temporal resolution in developing organs Arabidopsis thaliana
1220 differentially expressed genes (DEGs) further downregulated by miR394 includes AT-hook Motif Nuclear Localized (AHL) genes Arabidopsis thaliana
RiMsn2 acts as transcription factor Rhizophagus irregularis
LAM1 may localize to nucleus Oryza sativa
(ATWRKY75, WRKY75, AT5G13080) and some ER UPR genes gathered in a cluster in gene co-expression network Arabidopsis thaliana
freed up G-box binding sites allow other G-box binding factors to eventually bind and induce required gene expression
ZmBELL10 directly recognizes specific DNA sequences and activates expression of target genes Zea mays
MALE STERILITY 1 (MS1, AT5G22260) encodes plant homeodomain (PHD) finger motif transcription factor Arabidopsis thaliana
three DEGs overlapped between upregulated DEGs in rhw1-1 and downregulated DEGs in OE#1 are likely candidate genes acting downstream of RHW1 regulation Zea mays
TuMYB93 could bind unmethylated promoter of AlABCB7 Triticum urartu; Aegilops longissima
regulatory relationships between MYB TFs and EVM0044363 are supported by wheat integrative gene regulatory network wGRN via its ortholog (TraesCS3B03G1002300) in hexaploid wheat Triticum aestivum
ERF family members binds DRE/CRT elements
35S::PsRGL1 and 35S::PsSOC1 reduced fluorescence and luciferase activity Paeonia suffruticosa
MdNAC5 has similar effects on P1 and P2 promoter fragments Malus domestica
MdEIN3.4 could activate MdSWEET15a promoter Malus domestica
(ATWHY1, PTAC1, WHY1, AT1G14410) protein binds to ssDNA of promoter sequence of (ATWRKY53, WRKY53, AT4G23810) Arabidopsis thaliana
overaccumulation of RhNAC100 transcripts in transgenic Arabidopsis plants (RhNAC100m-ox/Col) resulted in significant changes in expression of 549 genes Arabidopsis thaliana
histone (H2B, HTB2, AT5G22880) monoubiquitination (H2Bub) regulates transcription elongation
OsPP18 is down-regulated in SNAC1 artificial microRNA transgenic plants Oryza sativa
promoters in biosynthetic pathways may allow for specificity to integrate signals Arabidopsis thaliana
(FBI1, HFR1, REP1, RSF1, AT1G02340) heterodimerizes with other PIF proteins possessing G-box binding activity Arabidopsis thaliana
perturbed auxin metabolism uncoupled (anac017, NAC017, RAO2, AT1G34190) transcriptional (AOX1A, ATAOX1A, AtHSR3, HSR3, AT3G22370) activation Arabidopsis thaliana
NF-YC and NF-YB heterodimer unites with NF-YA ( (GCS1, HAP2, AT4G11720) /CBF-B) Arabidopsis thaliana
Y1H supported evidence of direct binding of MdMYB88 to the promoter regions of MdVND6 and MdMYB46 Malus domestica
(CRY3, AT5G24850) is Class-2 gene
(ARQ1, HAC1, AT2G21045) affects flowering time through reversible acetylation of transcriptional regulator(s) Arabidopsis thaliana
complex network of interacting proteins could provide both gene specificity and integration of multiple input signals that are known to affect plastid gene expression
antioxidants modify gene expression
WUSCHEL (PGA6, WUS, WUS1, AT2G17950) and related WOX transcription factors repress transcription by recruiting co-repressor TOPLESS (TPL, WSIP1, AT1G15750) -related (TPR) and histone-deacetylase 19 (ATHD1, ATHDA19, HD1, HDA1, HDA19, HDAC19, RPD3A, AT4G38130) Arabidopsis thaliana
exclusion of all three (AtbZIP, bZIP, AT1G68880) proteins in triple mutant would free up G-box binding sites
ZmBELL5 binds to same motifs as ZmBELL10 Zea mays L.
AtBELLs appear to generally repress gene expression Arabidopsis thaliana
Phe-227 and Phe-251 did not affect transactivation activity
OsHMGB1 occupancy positively correlated with genome-wide expression levels Oryza sativa
206 DEGs between rhw1-1 and wild-type were identified between rhw1-1 and wild-type plants Zea mays
TuMYB93 could promote expression of AlABCB7 Triticum urartu; Aegilops longissima
5 of 20 MYC2-transcriptional core genes are targeted exclusively by PtaMYC2.1 only Populus tremula × alba
PtaMYC2.1 and PtaMYC2.2 transcription factors thanks to their binding ability to G-box motifs Populus trichocarpa
SlERF.C1 may directly bind to promoters to regulate PR gene transcription Solanum lycopersicum
OsGhd7 is hypothesized to repress via protein complex formation Oryza sativa
BpERF61 overexpression lines (BpERF61-OE5, BpERF61-OE6, BpERF61-OE7) show differentially regulated BpERF61 target genes Betula pendula
(ATWHY1, PTAC1, WHY1, AT1G14410) directly regulates (ATWRKY53, WRKY53, AT4G23810) expression Arabidopsis thaliana
(ATWHY1, PTAC1, WHY1, AT1G14410) regulates transcription of other downstream target genes Arabidopsis thaliana
RTCS binding is demonstrated by specific competition with unlabeled LBD promoter sequences Zea mays
GBD fusion proteins with VQ19, VQ31, VQ4, VQ8, VQ13, VQ33, VQ11, (VQ29, AT4G37710) VQ7, VQ2, VQ21, or (VQ20, AT3G18360) remarkably repressed LUC reporter expression Arabidopsis thaliana
point mutations of conserved V and Q residues in the VQ motif of (VQ29, AT4G37710) alter transcriptional activity of (VQ29, AT4G37710) Arabidopsis thaliana
KINASE-INDEPENDENT 17 (AtKIN17, KIN17, AT1G55460) may function in accompanying transcription factors
(ATPDX1.1, PDX1.1, AT2G38230) and (ATPDX1, ATPDX1.3, PDX1, PDX1.3, RSR4, AT5G01410) are differentially regulated by distinct regulatory elements Arabidopsis thaliana
MADS box proteins function in transcriptional regulation Arabidopsis thaliana
OsTGA10 activates transcription of target genes Oryza sativa
GRF-GIF duo may act as key transcriptional complex in transcriptional networks involved in leaf organ growth Arabidopsis thaliana; Zea mays
rice OsBZR1 can bind the promoters of GA inactivation genes Oryza sativa