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alternative splicing

17254 relationships annotated with this phrase. Showing first 500 of 17254.
Source entity Relationship Target entity Species
event in evolutionarily derived bony fishes (Euteleostei) is regulated by exon skipping Euteleostei
(MIR400, AT1G32582) and levels are mainly regulated by Cd through intron retention (IR) processing Arabidopsis thaliana
(At-RS40, AT-SRP40, ATRSP35, ATRSP40, RS40, RSP35, AT4G25500) (At-RS41, ATRSP41, RS41, AT5G52040) RS45, and (SMU2, AT2G26460) are involved in regulation of alternative mRNA splicing Glycine max
severe heat stress produces HSFA2-III splicing variant Arabidopsis thaliana
alternative 3′ splicing site is one of four main types of alternative splicing
splicing variation potentially allows for additional functions or differential regulation of the gene in other organs Amaranthus hypochondriacus
types of alternative splicing in protein sequences related to the remaining experimentally validated alternative splicing events in plants were systematically inspected
plant genes show high extent of evolutionary plasticity of protein isoforms controlled by alternative splicing (AS)
mutually exclusive exons (MXE) is major type of alternative splicing (AS)
AS2a and AS2b are classified as (AS2, AT1G65620)
QuantAS includes specific primer design for identifying alternative splicing events
other heavy metals and ferrous and cupric ions do not trigger intron retention (IR) event Arabidopsis thaliana
2,207 differentially spliced genes (DSGs) include 1,188 SE, 272 A5SS, 605 A3SS, 46 MXE, and 619 IR events Glycine max
alternative inclusion of the internal protein motif is conserved up to ancient teleost fishes teleost fishes
temperature-dependent alternative splicing of TaHSFA6e generates two types of functional transcripts Triticum aestivum
TaHSFA6e Type III transcript encodes TaHSFA6e-III protein Triticum aestivum
four additional residues in AhMYB2.2 stemmed from earlier start of exon 3 Amaranthus hypochondriacus
using QuantAS to accurately identify conserved genes or conserved sequences can aid in predicting isoform function
QuantAS can be widely used to estimate the accuracy of spliced sequences in the present mainstream database
infected KD-GmBIR1 relative to noninfected KD-GmBIR1 identifies 2,207 differentially spliced genes (DSGs) Glycine max
TaHSFA6e undergoes alternative splicing when subjected to heat stress Triticum aestivum
retaining intron (RI) alternative splicing is largest alternative splicing classification Arabidopsis thaliana
GmBIR1 signaling pathway has a role in regulating substantial number of alternatively spliced events induced by SCN Glycine max
RNAi lines with increased proportion of alternative splicing variants with intact R2R3-MYB and no TAD might have ability to block senescence but not enough to induce transcription
skipped exons (SEs) disrupt open reading frame of (AtC3H42, GDS1, AT3G47120) Tanacetum cinerariifolium
(XBAT35, AT3G23280) has two splicing variants, XBAT35.1 and XBAT35.2 Arabidopsis thaliana
(ATHSFA2, HSFA2, AT2G26150) undergoes alternative splicing in a temperature-dependent manner temperature-dependent alternative splicing Solanum lycopersicum
splice variant of HSFA2-II is degraded due to introduction of a premature termination codon in the unexpected mini-exon Arabidopsis thaliana
(AGL27, FLM, MAF1, AT1G77080) (FLOWERING LOCUS M) has two major splice variants, FLM-β and FLM-δ Arabidopsis thaliana
OsFKBP20-1b interacts with OsSR34 Oryza sativa L.
OsFKBP20-1b regulates stability of OsSR34 Oryza sativa L.
BLAST output lists contain alternative splicing events of paralogous genes
alternative splicing plasticity of experimentally validated alternative splicing events from animals was analyzed
SRPKIIs regulate the alternative splicing of approximately 400 genes Arabidopsis thaliana
mutually exclusive exon is one of seven types of alternative splicing events
black section is common area of all the isoforms
cadmium (Cd) treatment triggers stress-specific intron retention event in miR400-containing intron Arabidopsis thaliana
TaHSFA6e generates TaHSFA6e-III Triticum aestivum
90 DASGs shared between srpkii-1 and (AtSR45, RNPS1, SR45, AT1G16610) represent overlap in alternative splicing patterns Arabidopsis thaliana
expression of only one isoform does not fully compensate mutant phenotype
homologous genes may be spliced in the same AS event in relative species
infected WT-GmBIR1 compared with noninfected WT-GmBIR1 identifies 3,004 differentially spliced genes (DSGs) Glycine max
912 SE, 136 A5SS, 372 A3SS, 63 MXE, and 496 IR events correspond to 1,576 unique genes Glycine max
OsSR34 and OsSR45 function together in alternative splicing Oryza sativa L.
alternative splicing patterns may be evolutionarily conserved
QuantAS offers universal method for the detection and quantification of isoforms in plants
spliceosome-associated immunophilin functions in alternative RNA splicing in rice Oryza sativa L.
this phenomenon is less seen among animals
CatSnap pipeline was tested for versatility by examining conservation of prominent characterized alternative splicing events in animals
801 alternatively spliced events are shared by WT-GmBIR1 and KD-GmBIR1 upon SCN infection Glycine max
422 alternatively spliced events are oppositely regulated in WT-GmBIR1 and KD-GmBIR1 Glycine max
Catsnap algorithm used for analyzing conservation of emerging experimentally characterized alternative proteins
shortening of NOSTRIN N-terminus in the stressed liver results in NOSTRINβ isoform Homo sapiens
specific primers are selected according to splicing site locations
HSFA2-III splicing variant encodes truncated 129-amino acid isoform Arabidopsis thaliana
intron retention is one of four main types of alternative splicing
AHp022773 (AhMYB2) produced two different isoforms (AhMYB2.1 and AhMYB2.2) Amaranthus hypochondriacus
intron retention events are more prevalent than alternative 5' splice site (Alt 5'ss) and alternative 3' splice site (Alt 3'ss) Oryza sativa
peroxisome targeting signal inclusion is regulated by alternative acceptor site (AltA) in the third intron Arabidopsis thaliana
alternative acceptor site (AltA) in Glycine max and Solanum lycopersicum removes sole glutamate Glycine max; Solanum lycopersicum
different alternative splicing types and alternative transcription start sites (AltTSSs) lead to production of proteins matching the alternative SGR5β isoform
red section and blue section are common sections of one or some of the isoforms
Catsnap algorithm can detect conserved functional protein isoforms
same AS event usually occurred in relative species
alternative splicing (AS) generates complex eukaryotic transcriptomes
evolutionary history of this alternative splicing event illustrates relevance of determining the conservation of alternative splicing events at the amino acid level
protein isoforms can be functionally conserved and show high plasticity of alternative splicing types they arise from
conserved splice sites sequences or alternative splicing events can serve as potential predictors of gene function
TaHSFA6e-III protein has variation at C-terminus compared with TaHSFA6e-II protein Triticum aestivum
alternatively spliced genes contributes to thermotolerance Triticum aestivum
Catsnap algorithm detects conserved functional protein isoforms regardless of alternative splicing (AS) type
alternative first exon is one of seven types of alternative splicing events
30 DASGs shared among srpkii-1, (AtSR45, RNPS1, SR45, AT1G16610) and sc35-scl mutants include (At-SR30, ATSRP30, SR30, AT1G09140) U2AF65A, (AGL27, FLM, MAF1, AT1G77080) and (AGL31, MAF2, AT5G65050) Arabidopsis thaliana
QuantAS is valuable tool for addressing the complexities of isoform identification arising from various splicing events
alternative splicing-mediated formation of AHA domain underlies enhanced transcriptional activation activity of TaHSFA6e-III Triticum aestivum
(AS1, ATMYB91, ATPHAN, LL2, MYB91, AT2G37630) and AS3 have the same ending position in coding region
splice variant of HSFA2-II is generated under moderate heat conditions Arabidopsis thaliana
intron-retaining form of (ATHSFA2, HSFA2, AT2G26150) ( -III) encodes truncated isoform Arabidopsis thaliana
alternative last exon is one of seven types of alternative splicing events
PtRBM25 has multiple isoforms generated by AS Populus trichocarpa
quantitative analysis of isoforms using intron or exon–exon junction primers solves difficulty of identifying diverse alternative splicing events
alternative 5′ or 3′ splicing is type of alternative splicing event
natural intronic variation leads to increased accumulation of type II isoform Solanum lycopersicum
gene structure assembly plays a guiding role in analysis of AS event types
intron retention (IR) is type of alternative splicing event
GmBIR1 signaling pathway exerts powerful control over host spliceome Glycine max
splicing events of spliceosome-related genes and mRNA catabolism genes were less abundant in infected samples of Williams 82 and WT-GmBIR1 compared to noninfected samples Glycine max
TaHSFA6e-III is produced by alternative splicing at 36–45°C Triticum aestivum
alternative splicing (AS) patterns includes alternative 5' splice site (Alt 5'ss) Oryza sativa
CatSnap pipeline is designed to assess conservation of alternative splicing with the outcome at the protein level
phylogenetic tree construction using the poplar gene PtHSP70 and its homologs reveals related species often share the same alternative splicing events
PIN-FORMED 7 pre-mRNA transcripts are spliced into several isoforms
examining the evolutionary conservation on the basis of amino acid sequence brings remarkable insight into the evolutionary conservation of alternative splicing
exon skipping (ES) is major type of alternative splicing (AS)
exon skipping is one of seven types of alternative splicing events
PtLuc7-rl is gene of woody model plant poplar Populus trichocarpa
analyzing the effect of isoform expression patterns on overall expression levels based on different isoform copy numbers facilitates further functional studies
skipped exons result in truncated protein GDS2 with premature stop codon (TGA) Tanacetum cinerariifolium
splicing at alternative splicing sites in 3′ UTR would not change amino acid sequence of the resulting protein products Zea mays
shortest transcriptional variant of PtREV (2,568 bp) is devoid of 3′ untranslated region (UTR) sequence Populus trichocarpa
(PIRL6, AT2G19330) has association with alternative splicing Arabidopsis thaliana
173 DASGs shared among srpkii-1, (AtSR45, RNPS1, SR45, AT1G16610) and sc35-scl mutants represent 43.6% of srpkii-1 DASGs Arabidopsis thaliana
transcripts from genes with multiple exons undergo exon skipping (ES)
detecting multiple isoforms simultaneously in a single reaction decreases redundant identification
(AT-HSFA7B, HSFA7B, AT3G63350) (AT-HSFB1, ATHSF4, HSF4, HSFB1, TBF1, AT4G36990) and (AT-HSFB2A, HSFB2A, AT5G62020) in Arabidopsis are subjected to alternative splicing in response to heat stress Arabidopsis thaliana
two β-form (RCA, AT2G39730) cDNAs Zmrca1 and Zmrca2 appear to arise from alternative splicing of the same gene Zea mays
alternative splicing in the 3′ UTR can produce transcripts with different sequence lengths and/or structures
Zmrca1 and Zmrca2 mRNAs could arise from alternative splicing of ZmRCAβ genomic DNA Zea mays
alternative splicing may facilitate pleiotropic gene functions Populus trichocarpa
barley (Hordeum vulgare) contains alternatively spliced RCA gene rcaA Hordeum vulgare
rcaA produces two (RCA, AT2G39730) isoforms Hordeum vulgare
35S-RLPK-LUC transgenic Nicotiana benthamiana line was generated as alternative splicing reporter system Nicotiana benthamiana
alternative splicing is observed for (ATSPO11-1, SPO11-1, AT3G13170) in Arabidopsis Arabidopsis thaliana
unproductive alternative splicing may allow overlapping adjacent gene to remain widely transcribed Arabidopsis thaliana
transcripts C and D contained intron II in its entirety Arabidopsis thaliana
alternative splicing of stress-related genes was different between osfkbp20-1b mutant and the WT Oryza sativa
two different proteins in CLD and βC-plastoglobuli seem to be derived from gene CL1Contig7649 by alternative splicing Dunaliella bardawil
vegetative organs produce polyadenylated, alternatively spliced (PIRL6, AT2G19330) RNAs Arabidopsis thaliana
OsEMF2a is associated with cDNA sequences derived by alternative splicing Oryza sativa
Arabidopsis (Arabidopsis thaliana) produces two RCA isoforms via alternative splicing of (RCA, AT2G39730) transcripts Arabidopsis thaliana
retention of first 28 nucleotides of intron produces Zmrca1 mRNA Zea mays
detected phenotype-genotype associations in PtREV are represented by distinct SNPs localized toward 3′ end of the gene where alternative splicing and alternative transcript processing occur Populus trichocarpa
smaller transcript shows partial loss of exon 2 Arabidopsis thaliana
alternative (PIRL6, AT2G19330) mRNAs contained intron sequences Arabidopsis thaliana
RLPK.2 transcript carries premature stop codon Nicotiana benthamiana
associations of methylation with four types of differential AS (alternative splicing) events were investigated differential AS events Phyllostachys edulis
alternative (PIRL6, AT2G19330) mRNAs contained premature termination codons Arabidopsis thaliana
unproductive alternative splicing of (PIRL6, AT2G19330) mRNA prevents (PIRL6, AT2G19330) expression in sporophyte tissues Arabidopsis thaliana
mRNA transcripts from Arabidopsis and soybean undergo alternative splicing (AS) Arabidopsis thaliana; Glycine max
QuantAS provides new approach to dissecting the alternative splicing mechanism of functional genes
alternative splicing of one premRNA can produce α- and β-form (RCA, AT2G39730) transcripts
convergent overlapping gene pair is associated with increased likelihood of alternative splicing Arabidopsis thaliana
alternatively spliced transcripts of OsNAC5 showed differences in abundance between loss-of-function mutants and WT Oryza sativa
isoform 2 of OsNAC5 was expressed only in loss-of-function mutants, regardless of ABA treatment Oryza sativa
rice produce Rca-β isoforms from Rca-α genes by alternative splicing Oryza sativa
splice variants generated by alternative splicing can lead to formation of intrinsically disordered proteins or intrinsically disordered regions (IDRs)
intronic long interspersed elements (LINEs) recruit RNA-binding proteins Homo sapiens
aberrant transcripts that retained introns were higher in osfkbp20-1b k/o mutant than in the WT Oryza sativa
transposon insertions within genes is often associated with simultaneous occurrence of multiple alternative isoforms
(SPO11-2, AT1G63990) isoforms in Arabidopsis are produced by intron retention or exon skipping Arabidopsis thaliana
35 plant species with only Rca-α genes could generate both isoforms by alternative splicing
9 of 42 plant species with separate Rca-α and Rca-β genes were also capable of expressing spliced variants of Rca-α
isoform 1 of OsNAC5 was similarly expressed in WT and k/o or k/d mutants Oryza sativa
Rca-β isoforms are not expected to be phosphorylated unless Rca-α gene transcripts have been alternatively spliced to generate Rca-β isoforms Brassica rapa
premature stop codon prevents luciferase expression Nicotiana benthamiana
abundance of all alternatively spliced variants of stress-responsive genes was higher in k/o mutants than in the WT Oryza sativa
alternative isoforms of OsLIP9, OsNAC5, and OsLEA3 were expressed regardless of ABA treatment in k/o mutants Oryza sativa
splicing regulatory effectors (SREs) interact with host targets Phytophthora infestans; Solanum lycopersicum
alternative splicing was not detected in pre-mRNAs of OsRAB16 and OsNAC6 Oryza sativa
alternative splicing (AS) can lead to different untranslated regions (UTRs)
JAZ genes contain Jas intron
ARABIDOPSIS FUSCA3 COMPLEMENTING GENE 2 (AFC2, AME1, FC2, AT4G24740) kinase regulates AUXIN RESPONSE FACTOR 6 (ARF6, AT1G30330)
old long interspersed nuclear elements (LINEs) with lost RNA-binding motifs provide new splice sites
SRE3 (Pi06094) physically interacts with splicing factor (U1-70K, U1SNRNP, AT3G50670) Phytophthora infestans; Nicotiana benthamiana
alternative splicing mechanism generally works for Rca-α genes regardless of origin
alternative splicing allows plants to exert fine-tuning and tight control over gene expression under various environmental conditions
PsbP gene in grapevine has two isoforms Vitis vinifera
ARABIDOPSIS FUSCA3 COMPLEMENTING GENE 2 (AFC2, AME1, FC2, AT4G24740) kinase regulates (IAA29, AT4G32280)
alternatively spliced region of RLPK is fused with luciferase (LUC) gene Nicotiana benthamiana
RLPK.1 transcript produces functional luciferase Nicotiana benthamiana
splicing regulatory effectors (SREs) bind splicing factors Phytophthora infestans; Nicotiana benthamiana
ratio of Rca-α/Rca-β is physiologically important and regulated by alternative splicing
JAZ4.2 transcript encodes truncated Jas domain Arabidopsis thaliana
ARABIDOPSIS FUSCA3 COMPLEMENTING GENE 2 (AFC2, AME1, FC2, AT4G24740) kinase regulates (PILS5, AT2G17500)
multiple alternative (PIRL6, AT2G19330) mRNAs were detected in sporocyteless (NZZ, SPL, AT4G27330) mutant flowers Arabidopsis thaliana
alternative splicing in overlapping gene pairs may allow for differential regulation of the genes at such loci Arabidopsis thaliana
alb4-specific primers amplify two fragments due to alternative splicing Arabidopsis thaliana
alternative splicing is observed for SPO11 in mammals Mammalia
TE in introns can give rise to new isoforms through exonization, truncation, alternative splicing, or combination thereof
(FUS3, AT3G26790) (AtLEC2, LEC2, AT1G28300) and (FLA, FRI, RSB7, AT4G00650) enable production of full-length (AGL25, FLC, FLF, RSB6, AT5G10140) transcript isoforms Arabidopsis thaliana
alternative splicing mechanism plays role in suppressing Rca-α expression
alternative splicing produces proteins with different domain rearrangements
(MED25, PFT1, AT1G25540) interacts with PRE-mRNA-PROCESSING PROTEIN 39a (PRP39, PRP39a, AT1G04080)
YTHDC-type YTH domain in (AtC3H11, ATCPSF30, CPSF30, OXT6, AT1G30460) can be retained or spliced Arabidopsis thaliana
Turkey and Cyprus ecotypes show different alternative splicing Aethionema arabicum
(MED25, PFT1, AT1G25540) physically recruits (ATPRP40A, PRP40A, AT1G44910)
CsubMADS1 splice variant has intron retention Coccomyxa subellipsoidea
(SGC, AT4G18530) is predicted to encode three splicing variants Arabidopsis thaliana
alternative splicing plays a role in plant adaptation to environmental stresses
DNA methylation plays only a fine-tuning role in alternative splicing of a small portion of genes
annotated ESTs might code for alternatively spliced protein different from CKX Zea mays
OsPARP1.2 is alternative splicing variant of OsPARP1 Oryza sativa
alternative splicing (AS) regulates abundance and composition of NLR transcripts
(MED25, PFT1, AT1G25540) physically recruits PRE-mRNA-PROCESSING PROTEIN 39a (PRP39, PRP39a, AT1G04080)
Os03g01420, Os03g01442, Os03g01490 and Os03g01520 have alternative splice sites Oryza sativa ssp. japonica
(FCA, AT4G16280) co-transcriptionally promotes production of truncated versions of (AGL25, FLC, FLF, RSB6, AT5G10140) transcripts Arabidopsis thaliana
alternative splicing of maize (DREB2, DREB2A, AT5G05410) (ZmDREB2A) produces two ZmDREB2A transcripts Zea mays
mis-splicing events often result in truncated polypeptides Triticum aestivum; Oryza sativa
comprehensive RNA sequencing (RNA-seq) datasets across diverse tissues, developmental stages, and environmental conditions capture isoform diversity
several OsRLCKs probably undergo alternative splicing Oryza sativa
OsWRKY62 gene encodes OsWRKY62.1 and OsWRKY62.2 Oryza sativa
At-XBAT35 gene has alternative splicing not regulated by TSA Arabidopsis thaliana
non-protein-coding transcripts undergo alternative splicing
alternative splicing (AS) has functional role in regulation of NLR transcripts
CrCOL1s and CrCOL2s transcripts originated by alternative splicing Chenopodium rubrum
dark-light coverage ratios are higher than 1 in exon 11, intron 11, exon 12, and intron 12 of At-U2AF65 Arabidopsis thaliana
various plant species produce shorter and longer transcripts of (ACS, AT5G36880) isozymes
intron retention is major form of alternative splicing
current AI-based methods typically do not model alternative splicing
chimeric transcripts upon alternative splicing result in novel chimeric protein fusions
stress-induced incomplete spliced transcripts of (ACS, AT5G36880) isozymes are non-functional transcripts
substantial accumulation of (FOC, MIR160, MIR160A, AT2G39175) and miR5175a splicing isoforms mostly lack introns which contain the miRNA-bearing hairpin structures Hordeum vulgare
U11/ (U12, AT1G61275) snRNP-specific protein-encoding genes more than half undergo alternative splicing Arabidopsis thaliana
all types of alternative splicing are cell type-dependent Arabidopsis thaliana
alternative splicing is less complex in EXP7-expressing cells Arabidopsis thaliana
exon skipping contributed the least to total alternative-splicing events Arabidopsis thaliana
PsABI3-1 is largest isoform Pisum sativum
clone 1 excluded three amino acid residues in second exon region Zea mays
5' splicing event in PsABI3-5 involves short direct repeat (TCA)5 Pisum sativum
melting curve of samples from third leaf stage plants of early DH pools is irregular compared with melting curve of other stages
two isoforms of Rubisco activase are produced by alternative splicing Arabidopsis thaliana
PsABI3-7, PsABI3-5, and PsABI3-4 include additional splicing event Pisum sativum
seven ABI3-like cDNA isoforms are originated by alternative splicing Pisum sativum
two distinct transcripts from (KAT5, PKT1, PKT2, AT5G48880) encode cytosolic and peroxisomal proteins Arabidopsis thaliana
missing fragment in PsABI3-2 affects PST region and entire subdomain A2 and part of B1 domain Pisum sativum
splicing events of (ABI3, AtABI3, SIS10, AT3G24650) VP1 transcripts in monocots often result in frame-shifts and premature termination of resulting polypeptides Oryza sativa; Triticum aestivum
M2 domain is affected by alternative splicing Chenopodium rubrum
coexistence of two different alternatively splicing patterns in one BrFLC1 accession is different from co-existence of constitutive splicing and alternative splicing patterns for (AGL25, FLC, FLF, RSB6, AT5G10140) in Arabidopsis Brassica rapa; Arabidopsis thaliana
real-time PCR using forward primer over exon 3–4 junction detects correctly spliced BrFLC2 transcripts Brassica rapa
PsABI3-3 implies removal of fragment with same GT 5' border Pisum sativum
isoforms PsABI3-2, PsABI3-3, PsABI3-6, and PsABI3-7 have borders limiting missing fragments with GT … AG Pisum sativum
GT … AG borders are characteristic of U2-type introns Pisum sativum
real-time PCR using forward primer in exon 4 with reverse primer over exon 5–6 junction amplifies transcripts with correctly spliced and retained intron 3 Brassica rapa
ER stress-induced splicing event results in frame shift within OsbZIP50 C-terminal region Oryza sativa
Rubisco activase consists of two isoforms Arabidopsis thaliana
different isoforms of PsABI3 are product of alternative splicing Pisum sativum
processing in PsABI3-4, PsABI3-6, and PsABI3-7 generates premature stop codons Pisum sativum
stop codon within retained intron would give rise to translated polypeptide lacking domain B3 Arabidopsis thaliana
5′ splicing event in PsABI3-5 involves short direct repeat (TCA) 5 Pisum sativum
three matching EST sequences (EE013728, CO453006, and FL282551) preserve second intron in the full length of 674 bp Zea mays
CatSnap search revealed types of alternative splicing in JAZ10.3 highly vary among other plants
many plant genes show high degree of plasticity of the alternative splicing types during evolution
intron retention (IR) is major type of alternative splicing (AS)
GmBIR1 signaling pathway regulates alternative splicing of spliceosome-related genes Glycine max
OsFKBP20-1b promotes splicing of retained introns Oryza sativa
QuantAS allows precise alternative splicing identification to determine alternative splicing event types
abiotic stress markedly enhances frequency of intron retention (IR) events in plants
GmBIR1 signaling pathway regulates soybean spliceome Glycine max
protein isoforms carry physiologically relevant functions
(RPS4, uS4M, ATMG00290) (Resistance to Pseudomonas syringae 4) undergoes alternative splicing (AS) Arabidopsis thaliana
genes with same AS events are marked with yellow, green, and gray
cold acclimation caused number of intron retention (IR) events increased significantly Camellia sinensis
GmBIR1-mediated differential phosphorylation of splicing factors plays a key role in establishing host spliceome upon SCN infection Glycine max
TaHSFA6e was alternatively spliced under heat stress Triticum aestivum
heat stress-induced TaHSFA6e-III protein isoform exhibited increased transcriptional activation activity compared with TaHSFA6e-II Triticum aestivum
Long terminal repeat retroelements (LTR-REs) can induce alternative splicing
EJC protein-encoding genes more than half undergo alternative splicing Arabidopsis thaliana
intron retention strongly repressed for subset of genes encoding proteins crucial to root-hair morphogenesis Arabidopsis thaliana
non-U2 or non-U12-type splicing events have been described for other plant genes
alternative splicing is obvious in early lines Brassica rapa
alternative splicing (AS) patterns includes exon skipping (ES) Oryza sativa
(RCA, AT2G39730) isoforms are processed by multiple types of alternative splicing (AS)
(GEMIN2, AT1G54380) may regulate nitrate signaling by alternative splicing
increase in 3′end transcript densities in dark are also observed in (AT-RS2Z33, ATRSZ33, RS2Z33, RSZ33, AT2G37340) ASE Arabidopsis thaliana
rare alternatively spliced FTa1 transcript is discovered in R108 and spring1 Medicago
argininosuccinate lyase (OsASL1/OsAL1) has two transcripts Oryza sativa
TaHSFA6e Type II transcript encodes TaHSFA6e-II protein Triticum aestivum
genome annotation included annotation of multiple isoforms for 3484 genes Amaranthus hypochondriacus
understanding of alternative splicing in rice is incomplete Oryza sativa
SKRP regulates pre-mRNA alternative splicing of hundreds of genes, including several defense-related genes Glycine max
QuantAS is better choice for validating alternative splicing, especially in nonmodel plants where established efficient protoplast transfection systems are lacking
shorter transcripts derived from the CrCOL1 and CrCOL2 genes lacked a region encoding a part of the M2 domain Chenopodium rubrum
At-XBAT35 gene has alternative splicing regulated by light Arabidopsis thaliana
isogroups presumably represent one gene locus capable of producing multiple, alternatively spliced transcripts Haematococcus pluvialis
Potri.006G070000 has three transcript variants Populus trichocarpa
changes in alternative splicing reduce amount of shortest splicing isoform (mRNA1)
non-canonical dinucleotides are used for splicing Pisum sativum
differences in BrFLC2 expression may be partly regulated by alternative splicing Brassica rapa
light is mediated by chloroplast
protein coding genes show alternative splicing events Arabidopsis thaliana
IRE1-mediated splicing mechanism of OsbZIP50 orthologues may be conserved among land plants Oryza sativa; Physcomitrella patens
At-XBAT35 ASE is sensitive to light Arabidopsis thaliana
(ATHD1, ATHDA19, HD1, HDA1, HDA19, HDAC19, RPD3A, AT4G38130) mutant results in increased usage of 3′ss2
71% of genes contained splice junctions in non-GFP cells Arabidopsis thaliana
BLAST and CLUSTAL W sequence-analysis tools facilitate comparison of splicing-related genes and proteins across various species
processes that require fast regulation and the integration of several internal and external signals more affected by DAS Arabidopsis thaliana
3′ss1 is weaker than 3′ss2
shorter transcript (band B) had 3′ splicing site of third intron 34-bp nucleotides ahead of WT site Arabidopsis thaliana
weaker band slightly larger than 1018 bp was more visible in cDNA templates from Al-tolerant lines SC566, SC283, SC175 and CMS225 Sorghum bicolor
hMATE2–K was found to be due to alternative splicing of hMATE2 Homo sapiens
NDC1-2 mRNA contains truncated reading frame Arabidopsis thaliana
PsABI3-4 has 3' acceptor site located in exon 5 Pisum sativum
splicing events may be cultivar-dependent Pisum sativum; Triticum aestivum; Oryza sativa
coexistence of two different alternatively splicing patterns in one BrFLC1 accession is different from intron retention pattern for BoGSL-ELONG in B. oleracea Brassica rapa; Brassica oleracea
alternative splicing is detected for intron 3 Brassica rapa
POPTR_0014s08600.2, POPTR_0015s11130.2, and POPTR_0001s47670.2 are alternative transcripts of POPTR_0014s08600.1, POPTR_0015s11130.1, and POPTR_0001s47670.1 Populus trichocarpa
alternative splicing may influence the choice of the genes controlled by CrCOL factors Chenopodium rubrum
(ATMSRB3, MSRB3, AT4G04800) has N-terminal and C-terminal extensions from alternative splicing Homo sapiens
smaller band from (GAUT7, LGT7, AT2G38650) RT–PCR may represent splice variant Arabidopsis thaliana
longest transcript (band A) contained intron 2 Arabidopsis thaliana
OsFKBP20-1b exhibits 955 differential alternative splicing (DAS) events Oryza sativa
Catsnap algorithm revealed (RCA, AT2G39730) isoforms are produced by more alternative splicing types in various plants
CatSnap pipeline documented stable and long evolutionary history of selected prominent animal alternative splicing events
GmBIR1 contributes to alternative splicing during compatible interaction between SCN and soybean Glycine max
exon skipping is one of four major classes of AS events
Col-0 and C24 reciprocal F1 hybrids showed no maternal bias in alternative splicing divergence Arabidopsis thaliana
lines expressing CDKG1S-GFP showed similar result rescue of (ATU2AF65A, AT4G36690) splicing phenotype Arabidopsis thaliana
alternative 3' splice site (alternative acceptor) is one of four main types of alternative splicing in plants Arabidopsis thaliana
7,807 intron-retention features were different between (ATEXP7, ATEXPA7, ATHEXP ALPHA 1.26, EXP7, EXPA7, AT1G12560) and non-GFP cells Arabidopsis thaliana
population of pre-mRNAs subjected to alternative splicing varies with structure and function of the cell type Arabidopsis thaliana
ARF post-transcriptional regulation controls formation of MP11ir isoform Arabidopsis thaliana
five of the 10 Arabidopsis U1 snRNP proteins, including the U1-70K-coding genes may undergo alternative splicing Arabidopsis thaliana
alternative splicing was more complex in non-GFP cells Arabidopsis thaliana
11th intron of (ATU2AF65A, AT4G36690) can be retained in some transcripts Arabidopsis thaliana
subset of 17 DIR and DES events were validated by qRT-PCR Arabidopsis thaliana
small interfering peptides (siPEPs) are produced by alternative splicing plants
increased elongation favors usage of 3′ss2
1,239 genes produced transcripts with differential alternative donor/acceptor (DADA) events Arabidopsis thaliana
exon skipping is important post-transcriptional method for controlling expression of splicing factor coding genes Arabidopsis thaliana
alternative splicing is more complex in non-root hair cells Arabidopsis thaliana
stronger band with molecular size of 1033 bp was detected and corresponds to expected size of fully spliced cDNA fragment Sorghum bicolor
atPrp39a can produce a shorter protein isoform with a novel amino-terminal sequence by exon skipping Arabidopsis thaliana
RACKJ software package was used to investigate four main types of alternative splicing in plants Arabidopsis thaliana
139 exon-skipping events were defined as significantly different between root hairs and non-GFP cells Arabidopsis thaliana
(REN1, AT4G24580) and (ATIRE1-1, AtIRE1b, IRE1, IRE1-1, IRE1B, AT5G24360) were among genes that produced transcripts with DADA events Arabidopsis thaliana
INDETERMINATE DOMAIN 14 (AtIDD14, IDD14, IDD14alpha, IDD14beta, AT1G68130) gene produces IDD14α isoform Arabidopsis thaliana
efficiency of splicing intron 11 was also reduced in comparison to Col-0 at 27°C Arabidopsis thaliana
missing fragment in PsABI3-2 shares with Nakako and Mori sequence same 5' splicing site Pisum sativum
DNA sequences missing in isoforms PsABI3-4, PsABI3-6, and PsABI3-7 start at same 5' border Pisum sativum
(AGL25, FLC, FLF, RSB6, AT5G10140) variant from Bur-0 accession displays partly retained intron 6 Arabidopsis thaliana
(ATGSTT3, GST10C, GSTT3, AT5G41220) has long splice variant Arabidopsis thaliana
splicing produces different mRNAs from a single pre-mRNA
intron retention is most abundant alternative splicing type in splicing-related genes Arabidopsis thaliana
OsIRE1 is involved in unconventional splicing of OsbZIP50 Oryza sativa
(CDKG1, AT5G63370) is required for alternative splicing of ATU2AF65A across tested temperature range Arabidopsis thaliana
three of them are apparently alternatively spliced Arabidopsis thaliana
A two-RRM U2AF65 protein can be produced through alternative splicing Arabidopsis thaliana
several over-represented GO processes associated with differential gene expression, but only to a minor extent with DAS Arabidopsis thaliana
CDKG1L (Long) mRNA is alternative mRNA species depending on intron retention Arabidopsis thaliana
splicing of (CDKG1, AT5G63370) is necessary to maintain correct balance between (ATU2AF65A, AT4G36690) splice forms across temperature range Arabidopsis thaliana
(ATRCY1, CYCL1, MOS12, RCY1, AT2G26430) is part of temperature-sensing module Arabidopsis thaliana
exon skipping in splicing-related genes is higher than exon skipping ratio in all Arabidopsis alternative splicing events Arabidopsis thaliana
(ELF3, PYK20, AT2G25930) and (ATCOL2, BBX3, COL2, AT3G02380) have cDNA of both splice forms, with and without detected cycling intron Arabidopsis thaliana
protein kinase (AFC2, AME1, FC2, AT4G24740) was included in differential exon skipping (DES) group Arabidopsis thaliana
(REN1, AT4G24580) is one of genes with root hair-specific expression and reduced retained introns Arabidopsis thaliana
(At-RS40, AT-SRP40, ATRSP35, ATRSP40, RS40, RSP35, AT4G25500) transcripts were less abundant in (ATEXP7, ATEXPA7, ATHEXP ALPHA 1.26, EXP7, EXPA7, AT1G12560) cells Arabidopsis thaliana
short transcript at the O1 locus conceptually encoded headless myosin Zea mays
alternative splicing generated shorter transcripts derived from the CrCOL1 and CrCOL2 genes Chenopodium rubrum
inclusion of second intron in (ELF3, PYK20, AT2G25930) could produce protein similar to that of elf3-1 mutant Arabidopsis thaliana
intron retention was the major type of event in most over-represented GO categories Arabidopsis thaliana
alternative splicing on a global scale question as to whether physiological significance or due to 'noisy' splicing of pre-mRNA Arabidopsis thaliana
snoRNAs is mainly involved in alternative splicing
cDNA lacking introns 2 and 3 is easily amplified RNAs 2 and 3 are minor variants Setaria viridis
some Rca-α genes of plants that have separate Rca-α or Rca-β genes can still produce portion of Rca-β by alternative splicing
1,254 exon-skipping events were seen in non-GFP cells Arabidopsis thaliana
7,807 intron-retention features (differential intron retention; DIR) were found in (ATEXP7, ATEXPA7, ATHEXP ALPHA 1.26, EXP7, EXPA7, AT1G12560) and non-GFP cells Arabidopsis thaliana
OsIRE1 overexpression lines (OsIRE1 OE lines) show unconventional splicing in absence of ER stress treatment Oryza sativa
type of alternative splicing determining inclusion or exclusion of protein regions varies throughout plant phylogenetic lineages
this alternative splicing event is likely non-homologous in these species Glycine max; Solanum lycopersicum
PtU1-70 K has four transcript sequence variants Populus trichocarpa
SCN-infected transgenic hairy roots expressing empty vector identifies 912 SE, 136 A5SS, 372 A3SS, 63 MXE, and 496 IR events Glycine max
differentially alternatively spliced genes (DASGs) in srpkii-1 overlap with DASGs in sc35-scl and (AtSR45, RNPS1, SR45, AT1G16610) mutants Arabidopsis thaliana
transcripts from genes with multiple exons undergo intron retention (IR)
alternative splicing (AS) event has evolutionary depth that is challenging to examine with ordinary homology searches
conserved sequences may be used as markers in phylogenetic analysis using QuantAS
existing methods can only verify known isoforms
3,004 differentially spliced genes (DSGs) include 1,677 SE, 409 A5SS, 849 A3SS, 30 MXE, and 932 IR events Glycine max
heat stress-induced TaHSFA6e-III protein isoform exhibits increased transcriptional activation activity due to introduction of an AHA motif Triticum aestivum
alternative splicing greatly expands coding capacity of eukaryotes through the production of alternative isoforms
temperature affects splicing of (ATU2AF65A, AT4G36690) Arabidopsis thaliana
(CDKG1, AT5G63370) alternative introns are preferentially spliced in Col-0 at higher temperatures Arabidopsis thaliana
osfkbp20-1b knockout mutant shows differential alternative splicing (DAS) events compared to wild-type (WT) Oryza sativa
PtU1C has two isoforms Populus trichocarpa
heat stress affects occurrence of splicing events in miR400-containing intron Arabidopsis thaliana
Arabidopsis (SMU2, AT2G26460) modulates alternative splicing of genes required for syncytium formation Arabidopsis thaliana
intron-retaining form of (ATHSFA2, HSFA2, AT2G26150) ( -III) is produced under severe heat conditions Arabidopsis thaliana
AhMYB2 gene has one stronger expressed and functional splice variant Amaranthus hypochondriacus
AtNSRa and AtNSRb differ due to new 1′ exon and two transcription start sites in AtNSRb locus Arabidopsis thaliana
NSR-HA complex binds AS mRNA targets Arabidopsis thaliana
alternative splicing event is triggered specifically by heat stress Arabidopsis thaliana
longer gene product suggested by RACE analysis is nMAT4L Arabidopsis thaliana
QuantAS provides convenient tool for advancing research on splice isoform function
Cd stress causes intron retention (IR) event of entire 306-bp intron Arabidopsis thaliana
(RCA, AT2G39730) isoforms in rice result from different alternative splicing type than in other species, including Arabidopsis Oryza sativa; Arabidopsis thaliana
certain isoforms fully overlap with other isoforms renders it impossible to design specific primers for their identification
natural intronic variation results in differential splicing efficiency of (ATHSFA2, HSFA2, AT2G26150) Solanum lycopersicum
alternative splicing (AS) of precursor messenger RNAs (pre-mRNAs) increases diversity of the transcriptome and proteome
(GEMIN2, AT1G54380) has been found to control alternative splicing of some clock genes
BLAST output lists contain sequences resulting from unrelated alternative splicing events
PtPRP40a is gene whose individual isoforms could not be calculated by MLE Populus trichocarpa
examining changes in all isoforms provides insights into common ancestry of species based on conserved alternative splicing event types
undetected isoforms may have certain impact on final quantitative results
QuantAS is valuable for validation of splicing events identified in large-scale omics data
exon skipping (ES) is type of alternative splicing event
HSFA2-II transcript contains additional 31-bp mini-exon Arabidopsis thaliana
rMATs (replicate Multivariate Analysis of Transcript Splicing) software identified 524 significantly different alternative splicing events Arabidopsis thaliana
transcripts from genes with multiple exons undergo use of alternative 5′ or 3′ splice sites (Alt 5′ss or Alt 3′ss)
alternative splicing sites in WT and osfkbp20-1b show GT-AG motif under normal conditions but rare unconventional CT and AC motifs upon ABA treatment in WT but not in osfkbp20-1b Oryza sativa
JAZ10.4 orthologs are products of same alternative splicing type Brassicaceae family
alternative splicing (AS) patterns in plants broadly vary compared to alternative splicing (AS) patterns in animals
(AS2, AT1G65620) isoform has proportion of copy numbers significantly higher than (AS1, ATMYB91, ATPHAN, LL2, MYB91, AT2G37630) isoform Populus trichocarpa
coupling QuantAS with qPCR and dPCR techniques will allow rapid and precise screening of isoform changes that participate in physiological responses
650 DSGs detected in WT-GmBIR1 under SCN-infected conditions indicates that more than one-third of alternatively spliced events induced by SCN are regulated by GmBIR1 signaling pathway Glycine max
227 genes subjected to SE events are also alternatively spliced in infected WT-GmBIR1 Glycine max
(PIRL6, AT2G19330) mRNA undergoes unproductive alternative splicing Arabidopsis thaliana
novel splice site accounts for variant transcripts detected in line #771 Arabidopsis thaliana
intron 2 is maintained in larger transcript Arabidopsis thaliana
line #771 shows aberrant splicing behavior due to G→A transition in intron 2 Arabidopsis thaliana
SRPKIIs regulate alternative splicing via SR proteins Arabidopsis thaliana
IR isoforms have functional role in biological pathways
alternative acceptor site (AltA) in Glycine max and Solanum lycopersicum does not affect predicted peroxisome targeting signal Glycine max; Solanum lycopersicum
existing methods have no effective way to verify the undetected isoforms
heat stress specifically induced alternative splicing (AS) event in the 306-bp intron where (MIR400, AT1G32582) was located Arabidopsis thaliana
alternative 5′ splicing site is one of four main types of alternative splicing
retrograde signal(s) regulation functions via alternative splicing
variability of alternative splicing types is seen among most well-characterized alternative isoforms
N gene undergoes alternative splicing (AS) Nicotiana tabacum
alternative 5' splice site is one of seven types of alternative splicing events
QuantAS has potential applications in early screening of disease by detection of abnormal alternative splicing events
GmBIR1 signaling pathway regulates alternative splicing during soybean cyst nematode infection Glycine max
R genes undergo alternative splicing (AS)
intron retention is one of seven types of alternative splicing events
KD-GmBIR1 compared to WT-GmBIR1 identifies 2,738 differentially spliced genes (DSGs) Glycine max
putative branchpoint (BP) was identified within 100 bp excised AS fragments
intron retention (IR) is most prevalent in plants
intron retention of (AGL25, FLC, FLF, RSB6, AT5G10140) introns 1, 2, 3, 5, and 6 is significantly reduced in shoot apex of srpkii-1 mutant Arabidopsis thaliana
protoplast transfection assays analyzes whether OsFKBP20-1b and splicing factors function together in alternative splicing Oryza sativa L.
logistic regression machine learning model implements amino acid similarity specifically within the alternative splicing region
spliceosome-associated immunophilin positively regulates splicing of retained introns Oryza sativa L.
650 differentially spliced genes (DSGs) are common to SCN-infected Williams 82 and SCN-infected WT-GmBIR1 Glycine max
TaHSFA6e generates TaHSFA6e-II Triticum aestivum
emerging experimentally characterized alternative proteins from plants and animals are conserved among other species
CatSnap is able to identify instances where the alternative splicing type varies, but the homology of the resulting amino acid sequence persists
QuantAS allows isoforms to be reclassified for different functional protein-coding regions
heat stress caused intron retention (IR) and exon skipping (ES) accounted for more than half of alternative splicing events Zea mays
RS45 is involved in suppressing innate immunity through reregulation of pre-mRNA splicing and control of splice site selection Arabidopsis thaliana
Serine/Arginine-rich 45 (AtSR45, RNPS1, SR45, AT1G16610) pre-mRNA transcripts are spliced into several isoforms
primary amino acid sequence is maintained while type of alternative splicing determining inclusion or exclusion of protein regions varies
logistic regression machine learning model implements position of (non-)aligned amino acids within the alternative splicing region
FLM-β : FLM-δ ratio is approximately 1.2-fold higher in srpkii-1 than in Col-0 Arabidopsis thaliana
OsFKBP20-1b functions as chaperone-like protein in the spliceosome Oryza sativa L.
usage of alternative 5′ and 3′ splice sites (A5SS and A3SS) is major type of alternative splicing (AS)
PtRBM25 is complex in structure with variety of AS events including IR, alternative 3′ splice site (3′AE) and alternative 5′ splice site (5′AE) Populus trichocarpa
applying QuantAS to study all isoforms facilitates comprehensive understanding of isoform expression patterns and regulatory modes under different conditions
straightforward experimental design and procedures of QuantAS makes QuantAS a valuable addition to the current tool chest for the study of alternative splicing
2,738 differentially spliced genes (DSGs) include 1,557 SE, 369 A5SS, 746 A3SS, 43 MXE, and 810 IR events Glycine max
Catsnap algorithm highlights presence of unexpectedly frequent hotspots where protein isoforms recurrently arise
(AS2, AT1G65620) isoform copy numbers is significantly higher in all poplar tissues Populus trichocarpa
significantly different alternative splicing events in srpkii-1 are mainly associated with (At-SR30, ATSRP30, SR30, AT1G09140) (At-SCL33, ATSCL33, SCL33, SR33, AT1G55310) (At-RS31a, RS31a, AT2G46610) (At-RS40, AT-SRP40, ATRSP35, ATRSP40, RS40, RSP35, AT4G25500) (At-RS41, ATRSP41, RS41, AT5G52040) and (AtSR45, RNPS1, SR45, AT1G16610) Arabidopsis thaliana
intron retention (IR) is most common form of alternative splicing in plants
studies of spliceosome structures provided understanding of how transcript abundance and diversity are generated in the plant lineage
truncated version of tumor necrosis factor receptor CD40 is processed by multiple alternative splicing types
heat stress responsive HSF expression is regulated by alternative splicing
human NOSTRIN (eNOS trafficking inducer) undergoes shortening of its N-terminus in the stressed liver Homo sapiens
QuantAS is able to detect multiple isoforms simultaneously in a single reaction
wheat seedling transcriptome revealed that c. 24.6% of genes exhibit alternative splicing patterns Triticum aestivum
3576 genes showed altered alternative splicing in response to heat stress Triticum aestivum
alternative splicing of premRNA at its 3′ UTR is not a rare phenomenon in plants
FLM-β is encoded by splice variant of (AGL27, FLM, MAF1, AT1G77080) Arabidopsis thaliana
heat-induced alternative splicing event of (MIR400, AT1G32582) still occurred in sr mutants
PKFP.2 transcript produces truncated protein without protein kinase domain Solanum lycopersicum
CPSF30-L is predominant isoform of (AtC3H11, ATCPSF30, CPSF30, OXT6, AT1G30460) Arabidopsis thaliana
alternative splicing with exon-2 skipping gives protein of 359 aa Triticum aestivum
Isoform β* from Physcomitrella patens corresponds to skipping of exon-2 Physcomitrella patens
alternative splicing events in srpkii-1 correspond to 397 genes Arabidopsis thaliana
MiMSP31 and MiMSP32 are likely splice variants of the same transcript Meloidogyne incognita
610 bp fragment amplified from cDNA suggests presence of alternative transcripts showing complete retention of intron 1 Sorghum bicolor
other splice variants of OsPCS1 and OsPCS2 are C-terminally truncated Oryza sativa
shorter isoform (NM_106095.1) is nMAT4S Arabidopsis thaliana
alternative splicing in splicing-related genes is much higher than overall frequency of alternative splicing in Arabidopsis Arabidopsis thaliana
siPEPs are produced by alternative splicing of transcription factor genes
splicing regulator genes have alternative splicing ratio over 33% Arabidopsis thaliana
Nonsense-mediated mRNA decay (NMD) plays a role in elimination of alternative splicing products plants
alternative splicing event affects expression of (NTRC, AT2G41680) gene
alternative splicing event results in transcript with premature stop codon
PMT3 has two splice variants Arabidopsis thaliana
(CDKG1, AT5G63370) intron 1 removal erases primary start codon (ATG) Arabidopsis thaliana
each sample contains an average of 4,500 alternative splicing events Arabidopsis thaliana
StSID2 has two variants: StSID2-1 and StSID2-2 Solanum tuberosum
alternative spliced form of HAP2-1 mRNA retains long intron (865 bp) in the 5′ leader sequence (LS) that contains three uORFs Medicago truncatula
1,114 genes with phytochrome-dependent rapid changes in alternative promoter selection showed only 14% with phytochrome-regulated alternative splicing Arabidopsis thaliana
auxin-related gene (AtDRM2, DAP2, DRM2, AT2G33830) transcripts exhibit changes in alternative splicing in response to auxin
m6A methylation indicates role in mRNA splicing
heat stress condition causes alternative splicing event in intron 1
two out of three alternative splice versions of CTPS produce non-filamentous CTPS proteins Drosophila
other three accessions did not show Alt5 event Arabidopsis thaliana
SPLICING FACTOR 1 binds to FLOWERING LOCUS M (AGL27, FLM, MAF1, AT1G77080) transcripts Arabidopsis thaliana
FLOWERING LOCUS M (AGL27, FLM, MAF1, AT1G77080) undergoes temperature-dependent alternative splicing Arabidopsis thaliana
longer transcript (band A) retained whole of intron 3 Arabidopsis thaliana
expression of intron 1 isoform was assessed in both parents and NILs Sorghum bicolor
other two transcripts (band B and C) are mis-spliced products Arabidopsis thaliana
extensive alternative splicing in SbMATE transcripts occurs in SbMATE transcripts Sorghum bicolor
animals possess many MAP splice variants
cryptic alternative splicing intron region results in unrecognized 206 bp intron including the (MIR400, AT1G32582) hairpin retained in the 5′UTR of host gene
QuantAS can calculate copy number of the complicated isoform according to MLE
alternative splicing (AS) can generate functional MP isoform lacking Aux/IAA dimerization domain
intron retention frequently leads to inclusion of premature stop codons Arabidopsis thaliana
translational frame shift would change C-terminal region of OsbZIP50 Oryza sativa
(AtJAZ4, JAZ4, TIFY6A, AT1G48500) has two naturally occurring splice variants JAZ4.1 and JAZ4.2 splice variants Arabidopsis thaliana
(MED25, PFT1, AT1G25540) (PRP39, PRP39a, AT1G04080) and (ATPRP40A, PRP40A, AT1G44910) recruits to JAZ loci to facilitate full splicing of JAZ genes
(atnudt22, NUDT22, AT2G33980) is characterized by transcriptional isoforms partly excluding intronic tDNAs Pro Arabidopsis thaliana
hypomethylation at tDNA Met in MSP1 intron correlates with production of adherent MSP1 transcript Arabidopsis thaliana
alternative transcripts retaining intron 3 have molecular size of 1126 bp Sorghum bicolor
alternative splicing of RUBISCO ACTIVASE (RCA, AT2G39730) produces longer RCAα and shorter RCAβ isoforms
evolutionary plasticity of alternative splicing types is also seen in animal systems
comparing conserved sequences at the splice sites for the same alternative splicing events suggests isoforms produced by genes with the same alternative splicing events in different species may either perform similar functions or undergo similar modulation
GmBIR1 regulates alternative splicing of pre-mRNA Glycine max
GmBIR1 signaling pathway plays a role in establishing alternative splicing during SCN infection Glycine max
removal of single 112-nucleotide intron produces Zmrca2 mRNA Zea mays
OsPARP1.1 is alternative splicing variant of OsPARP1 Oryza sativa