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evolution

18074 relationships annotated with this phrase. Showing first 500 of 18074.
Source entity Relationship Target entity Species
orthologous genes of (AT-POX, ATPDH, ATPOX, ERD5, PDH1, PRO1, PRODH, AT3G30775) revealed unique occurrences in warm-season legume crops Glycine; Phaseolus; Vigna; Amphicarpaea; Macrotyloma; Lablab
(AT-POX, ATPDH, ATPOX, ERD5, PDH1, PRO1, PRODH, AT3G30775) originated in Phaseoleae Glycine; Phaseolus; Vigna; Amphicarpaea; Macrotyloma; Lablab
heterochrony plays essential role in living organism diversification
studying genetic basis of plant responses to light changes from competition will advance understanding of adaptation to crop environment
rod components of PBS appear to have evolved separately through gene duplication, DNA exchange between cells, and possibly virally mediated lateral gene transfer
cyanobacterial and algal Rubisco isoforms reflect millions of years of evolution to operate in high [CO2] environment
heritability enables evolutionary response to natural selection
phenology may evolutionarily respond to natural selection Populus tremuloides
other species, including the cold-season legumes no Pdh1 orthologous gene was generated in
evolutionary mechanism underpinning plant flammability remains debated plant flammability evolution
reduced rates of trait evolution can occur through evolutionary constraint
five generations of artificial selection verify additive genetic variance for anther separation Raphanus raphanistrum
deeply conserved regulatory mechanism of water stress tolerance is shared across millions of years of evolution and divergence
MtNFH1 evolved from ancestral defense-related chitinase Medicago truncatula
increased organelle number is present in C2 species
demographic history is crucial to understanding structure of a syngameon
functional transition could be fulfilled by LoF mutation of orthologous (AT-POX, ATPDH, ATPOX, ERD5, PDH1, PRO1, PRODH, AT3G30775) genes Glycine max; Phaseolus vulgaris; Vigna unguiculata; Vigna radiata
stabilizing selection may act to maintain the trait in its current form
cotyledon number is deeply conserved trait
study on cotyledon number reported evidence for selection against plants with zero or one cotyledon
wind pollination has evolved repeatedly from insect-pollinated ancestors
C4 photosynthesis has independently evolved plant kingdom
proto-Kranz characteristics could be considered to be rudimentary features of C2 metabolism
miR394 is evolutionarily ancient
variations of LAD motifs evolved through random mutations
gliding motility contributed to evolutionary success of raphid diatoms
evolutionary history influences distribution of grass species' genome size (GS) Poaceae
successful C4 species make up majority of standing biomass in warm open ecosystems
climate-associated methylation may be a target of natural selection Fragaria vesca
western North American-western Eurasian disjunction has been attributed to parallel evolution to dry environments from related ancestors
more detailed analysis of Rubisco kinetic properties in macroalgae species examining possible coadaptation with CCMs present in these organisms
pod dehiscence in warm-season legumes might result from convergent evolution of genetics, including (AT-POX, ATPDH, ATPOX, ERD5, PDH1, PRO1, PRODH, AT3G30775) and (ATMYB26, MS35, MYB26, AT3G13890) orthologous genes Glycine max; Phaseolus vulgaris; Vigna unguiculata; Vigna radiata
plasticity can evolve under natural selection
studies on ACBPs in various ecotypes may provide important context for understanding genetic variation and adaptation
genetically determined differences in allocation include macroevolutionary differences among related species that inhabit different environments
Steinchisma laxa is C3 relative of the C2 species of Steinchisma
multiplicity of HSFs in plant species has been attributed to gene duplication and functional divergence during evolution
syngameon participation may be responsible for rapid radiations, niche diversification, and island colonization
this study aims to assess structure of syngameon and explore its evolutionary history
convergent sites in FT alignment were identified six convergent sites
orthologous (AT-POX, ATPDH, ATPOX, ERD5, PDH1, PRO1, PRODH, AT3G30775) gene was not identified in V. subterranea Vigna subterranea
ACBPs are highly-conserved proteins across different organisms
genus Oryza has long evolutionary history Oryza
SLAC sensitivity to ABA-signalling kinases may result from multiple gains
fitness of plants that show climate-associated methylation patterns could provide insights into evolutionary implications of epigenetic variation Fragaria vesca
differences between Rorippa species and Arabidopsis could be caused by species-specific adaptational response differences Rorippa amphibia; Rorippa sylvestris; Arabidopsis thaliana
C2 photosynthesis is important intermediate phase in the evolution of C4 photosynthesis
Flaveria has long served as biochemical and physiological model for C4 evolution
Arabidopsis HSFA1s went through subfunctionalization after gene duplication Arabidopsis thaliana
specific origin of orthologous (AT-POX, ATPDH, ATPOX, ERD5, PDH1, PRO1, PRODH, AT3G30775) genes and the convergent evolution of pod dehiscence particularly in warm-season legumes Glycine max; Phaseolus vulgaris; Vigna unguiculata; Vigna radiata
studies directly testing if roles of genes and signal-dependent activation of encoded proteins are conserved are important for understanding evolution of plant signalling processes
Pinus edulis and fallax-type form monophyletic group with the other three syngameon participants Pinus edulis; Pinus monophylla; Pinus quadrifolia; Pinus californiarum
homologous protein isoforms are maintained during evolution
evolutionary constraint can result from physical or chemical laws
selection in opposite directions with positive covariance causes constraint
trait not responding to artificial selection indicates constraint caused by lack of genetic variation
earlier studies testing constraint using artificial selection have not been on traits conserved over long evolutionary time scales
joint effects may have played crucial role in evolution of the hyperaccumulation trait
natural selection favours most fit/competitive individuals in population
hypothesis that Flaveria pringlei and Flaveria robusta exhibit proto-Kranz characteristics if supported could clarify why C4 plants evolved with such high frequency in the plant kingdom
this work shed light on evolution of pod dehiscence Glycine max; Phaseolus vulgaris; Vigna unguiculata; Vigna radiata
extremely strong additive genetic correlation between the short and long filaments is possible cause of genetic constraint maintaining tetradynamy Raphanus raphanistrum
gene duplication opened possibility to develop symbiotic enzyme that inactivates short and structurally modified nodulation factors Medicago truncatula
longer-term stasis and traits broadly shared across deeper phylogenetic groups have been thought to be more likely due to stabilizing selection or some other form of constraint
Plasmopara viticola possesses a remarkable ability to evolve Plasmopara viticola
species-specific kinetic properties of Rubisco result from long-term adaptive selection pressure
these Oryza OSCs potentially lost during long-term evolution Oryza
ZmUTP11 is homologous to yeast (EDA14, UTP11, AT3G60360) Zea mays; Saccharomyces cerevisiae
reduced genetic diversity of selfing populations inhibits adaptation to changing environments
(TGS1, AT1G45231) orthologs phylogenetic tree of green lineages
slower evolution within taxonomic groups results in trait similarities among organisms
rapid mesophyll (M)-to-bundle sheath (BS) trafficking networks are present in C2 species
(BAM1, AT5G65700) and (BAM3, AT4G20270) are only 50% identical at amino acid level
within-individual trait variation (WTV) can have evolutionary consequences
landmark studies on red algae have addressed phylogenetic relationships of red algae
plant and mammalian (ACS, AT5G36880) may have diverged dramatically after common origin
earlier studies testing constraint using artificial selection have not selected perpendicular to a strong correlation known to be caused by pleiotropy
genetic variation and adaptation facilitates phenotypic variability among Arabidopsis ecotypes Arabidopsis thaliana
orthologous (AT-POX, ATPDH, ATPOX, ERD5, PDH1, PRO1, PRODH, AT3G30775) genes may have originated from common ancestor Glycine; Phaseolus; Vigna; Amphicarpaea; Macrotyloma; Lablab
constraints due to correlated traits depend on presence and direction of selection on those traits
evolutionary instability of cooperative behaviours implies that modern crop plants have inherited competitive alleles from wild progenitors
Ser63 is conserved in cyanobacteria and green algae, but not in plants and red algae Chlorella ohadii
hybridization is important evolutionary process
MtNFH1 cleaving nodulation factors can be considered as neofunctionalization Medicago truncatula
C3-C4 intermediate species is studied in comparisons with C3 species
high heritability of phenology is likely a result of within-species evolution across populations or habitats
opposing impact on large-sized and small-sized primary producers is due to trade-off between cell and genome size
replacement of major oceanic primary producers occurred approximately 250 million years ago
plant phenotypes are shaped by evolutionary history
genome-wide characterization, phylogenetic, microsynteny, and ancestral reconstruction analyses using 39 legume species
repetitive DNA participates in evolutionary arms race with essential chromatin proteins
trees evolve to allocate carbon optimally to maximize fitness
diatoms have distinctive evolutionary history
traits with additive genetic variation can evolve
robustness against mutation is essential feature to maintain a high fitness state
further evolution toward improved properties of ID Rubisco is possible but limited to organisms living in low light environments or in acid hot springs
similar extent of time that effective carbon concentrating mechanisms (CCMs) may have been operating allows selection for improved Rubisco kinetics to relax
G-matrix might constrain evolution within a single population or among closely related species
widespread deforestation causes rapid losses of evolutionary history
correlated evolution of floral traits observed in the selfing syndrome is likely governed by strong selection pressures
large population size, obligatory sexual cycle, and highly repetitive genome grant great evolutionary potential Plasmopara viticola
similar photosynthesis rates among Hirschfeldia incana, Brassica nigra and Brassica rapa despite their distinct traits suggest convergence of physiological and anatomical acclimations that promote efficient CO2 assimilation Hirschfeldia incana; Brassica nigra; Brassica rapa
C4 pathway has stepwise origin C4 evolution
examination of ultrastructure and glycine decarboxylase (GDC) and Rubisco enzyme localization is warranted given that important early events postulated for C4 evolution may occur in bundle sheath (BS) cells during the transition from full C3 to C2-like photosynthesis
proto-Kranz is distinct early phase of C4 evolution
convergent amino acid evolution was detected using Profile Change with One Change (PCOC) model
tetradynamy is diagnostic for the family Brassicaceae
artificial selection is best method to test for short-term constraints
contrasting responses of Hirschfeldia incana and Brassica nigra could be explained by genetic relationships Hirschfeldia incana; Brassica nigra; Arabidopsis thaliana; Brassica rapa
less 'complex' organisms have smaller genome sizes
G-matrix encapsulates sources of evolutionary constraint
orthologous Pod dehiscence 1 (Pdh1) genes specifically originated in warm-season legumes Glycine max; Glycine soja
extremely strong additive genetic correlation is caused by pleiotropy or extremely tight linkage Raphanus raphanistrum
C4 pathway components are present in C2 plants that are closely related to C4 species
increased vein density is present in C2 species
Flaveria pringlei and Flaveria robusta may be good representatives of the last common ancestor between the C3 and C2 species within the genus Flaveria
high CO2 conditions provided by CCMs could overcome selection for higher carboxylation catalytic efficiency in macroalgae
Fructan-accumulating species had two independent evolutionary traces around fructan-accumulating species
relative amount of biomass in various organs determines plant's fitness
Blumeria has large effective population sizes Blumeria graminis
selective forces acting on R genes involve environmental factors
ancestral role for CSLCs as cellulose synthases is in keeping with CSLC family belonging to ancient lineage evolutionarily distinct from CESA lineage
members of CYP716 C subgroup function is not conserved and might rather reflect specific evolution of plant clades
miR394 is conserved across plant kingdom
evolution of organisms that can reach an optimal value for every trait simultaneously is impossible organisms
genetic basis of warm-season legumes controlling pod dehiscence may have strong conservatism Glycine max; Phaseolus vulgaris; Vigna unguiculata; Vigna radiata
convergent evolution of pod dehiscence in response to environmental changes (i.e. precipitation) in warm-season legume crops through evolutionary mechanism recruiting in the LoF alleles of this gene Glycine max; Phaseolus vulgaris; Vigna unguiculata; Vigna radiata
how this function affects fitness remains unclear Raphanus raphanistrum
five generations of artificial selection test for depletion of genetic variation by strong selection Raphanus raphanistrum
GLK regulation of reproduction via nutrient sensing could provide advantage and consequently maintained in evolution
Rubisco kinetic traits are more strongly constrained by phylogeny than catalytic trade-offs
broad-leaved conifers have evolved multiple times adaptation to light-limited, angiosperm-dominated environments
ftsZ gene family may be instructive to understand evolution of the cytoskeleton in land plants
selection pressure driven by climate represents only one aspect of adaptive evolution in poplar Populus trichocarpa
reduced fecundity in response to shade may be an evolved and adaptive trait evolved and adaptive trait
proteins from organisms adapted to widely different temperatures differ in thermal properties
two homologs of Su(z)12 possibly duplicated during evolution of Gramineae Oryza sativa
diatoms are eukaryote–eukaryote chimeras
divergence within flowering plant CSLC lineages occurred later than divergence of flowering plants and moss lineages
xyloglucan structure was conserved during evolution of Arecales (palms)
consistent differences in thermophilic proteins compared with cold-adapted proteins have been observed
sequence conservation signifies preservation of function across different environments Arabidopsis thaliana
bacterial tubulin FtsZ3 may have resulted in moss-specific evolution of eukaryotic β-tubulins Physcomitrella patens
two E(z)-like genes appear to have duplicated before separation of dicots and monocots Oryza sativa
evolutionary adaptation of plants to environmental changes leads to diverse natural variation
correlation between lack of conservation of internal SD and loss of photosynthetic capacity indicates relaxation of selection pressure in species no longer dependent on photosynthesis Cuscuta species
photorespiratory pathway evolved in connection with evolution of oxyphotobacteria
different organisms have evolved and now possess different cell organization and physiological features
higher number of positively selected sites and higher ω ratio in algal PDATs support notion that these enzymes may have higher functional importance in plants than in algae
positions important for transcription factor recognition may be more conserved and exhibit low SNP frequency Arabidopsis thaliana
AOX (alternative oxidase) is present in many lower animals
(AGL6, RSB1, AT2G45650) genes are closely related to SEP-like and AP1-like genes
all plant FtsZ proteins can be traced back to cyanobacterial ancestor
evolution of Zingiberales and Commelinales orders resulted in loss of XLFG units in xyloglucans
phylogeny of remaining Poales families indicates reversion to only XXXG core motif
(AVB1, IFL, IFL1, REV, AT5G60690) represents most recent class III homeodomain leucine zipper in land plants
Physcomitrella and Selaginella CSLCs separation reflects separate evolutionary paths taken by lycopod and moss lineages
diverse natural variation is critical for plant diversity
heat-adapted proteins are overly rigid and have low activity at cold temperatures
new functions in class III homeodomain leucine zipper genes appear to have been acquired in parallel with development of major body-plan innovations
MAF for variants associated with leaf abscission and cellulose is consistent with initial role for (AVB1, IFL, IFL1, REV, AT5G60690) in auxin signaling and subsequent functional evolution in supporting fundamental processes of vascular plant development Populus trichocarpa
genetic duplication of plant PDATs was followed by more recent duplication in some species
different enzymatic properties of PDATs would benefit organisms in terms of adapting to different environments
(BAM1, AT5G65700) and (BAM3, AT4G20270) arose before evolution of flowering plants
apomictic pathway enables rapid colonization of favorable environmental conditions apomicts
selective advantage of double or triple repeats enforces maintenance of repeats during evolution Arabidopsis thaliana
evolution of Flagellaria indica xyloglucans resulted in apparent regaining of XXG core motif Flagellaria indica
replacement of major oceanic primary producers from organisms expressing IB Rubisco to phytoplankton expressing ID Rubisco coincided with increase in ocean O2 : CO2 ratio
stabilizing selection on anther separation has been found in different years Raphanus raphanistrum
Sartwellia is sister genus to Flaveria
functions acquired by class III homeodomain leucine zipper genes were retained with relatively low divergence under purifying selection
fucogalactoxyloglucan structure was conserved during evolution of non-commelinid monocotyledons from basal angiosperm taxa
rapamycin-producing bacteria cohabited with spermatophytes
CO–FKBP12 interaction provides clue to evolutionary importance of the complex Arabidopsis thaliana; Chlamydomonas reinhardtii
RTM-GWAS was used to identify evolutionary factors through direct comparisons among QTL-allele submatrices/subpopulations
natural selection affects genetic diversity
flower heads combine many traits considered as key innovations in evolution
direct observation of evolution in a resurrection design has many experimental advantages over inference based strategies employed using single time point, extant population samples
intercrosses generate segregants carrying combinations of alleles that do not exist in natural populations
phylogenetic constraints promotes phylogenetic conservation
cyanogenesis polymorphism was demonstrated to have evolved through recurrent gene deletions over time Trifolium repens
green algae and plants share common ancestor
evolution subjected plants to constant Pi-limiting growth conditions of varying severity
photorespiratory pathway is thought to have evolved several billion years ago
Rca-α isoform may be adaptive under at least some circumstances
transgenerational effects of stress on epigenetic regulation creates genetic diversity
green algal PDATs are likely to have evolved under more relaxed constraints
the mutation either has little impact on or is a relatively recent event Arabidopsis thaliana
inversion is associated with life history divergence
reconstructed ancestral genomes establish framework to unveil puzzling evolutionary history of Cucumis species Cucumis
qMt-a-18-06 is new locus
sender and receiver with shared interest in propagating reliable information can bring large fitness benefits
circadian rhythms are conserved and have evolved between plant accessions and species
flowers that develop highly specialized organs such as ligules and pappus bristles is key innovation in evolution
replication strategy can mitigate problem with losing rare variation
multigenerational studies, especially those employing strong selection on a diverse starting population might be prone to exacerbating effect of linked selection inadvertently by establishing population structure in the early generations
evolutionary research can point out diverse adaptive strategies in plants
transposable elements (TEs) involvement in evolution of gene networks
LysM-RLKs were found to be mainly subject to purifying selection
positive selection may have led to increased functional importance of (ATPDAT, PDAT, PDAT1, AT5G13640) enzymes in land plants compared with green algae
divergence of promoter sequences between inbred lines might be the result of domestication through artificial selection Oryza sativa
Pinaceae family and major genera including Pinus and Picea estimated to have radiated ∼90–100 million years ago Pinus; Picea
local adaptation seems relatively unlikely in this agricultural site Arabidopsis thaliana
certain barley (XET, XTH33, AT1G10550) enzymes with hetero-transglycosylation substrate specificity may have co-evolved Hordeum vulgare
WD40-RLKs show evidence of positive selection Coleochaete braunii
evolution of PDATs in green algae and plants is not closely aligned with evolution of species within these groups
retention of extra (ATPDAT, PDAT, PDAT1, AT5G13640) copies during evolution of eudicots may indicate contribution to increased fitness in these plants
transition to Poaceae resulted in loss of almost all XXXG core motif units and all fucosylated units
AN may have acquired plant-specific functions during evolution
genetic drift (Brownian evolution) promotes random variation
functional redundancy provides stability to genomes and biological systems of organisms during long evolutionary periods
complex molecular mechanisms that underlie plant–microbe interactions may constrain evolutionary changes
Viridiplantae and heterokonts such as diatoms are separated from a common ancestor by more than a billion years of evolution
elaboration of specialized metabolism is considered one of the drivers for substantial radiation of embryophytes on land
small differences in REP preference for particular (RAB, RBE, AT5G06070) family members may be explained by differences in priorities for unicellular versus organ-built organisms
allele exclusion integrated with allele recombination is responsible for emergence of new MG sets
KNOX genes exhibit cis-regulatory divergence
endosymbiont gradually converted to organelle
segregants carrying combinations of alleles that do not exist in natural populations are suitable for estimating contribution of multilocus allelic interactions to local adaptation
evolution shapes degeneracy, robustness, and evolvability
genetic and epigenetic effects of (ATNACK2, NACK2, TES, AT3G43210) contribute to genome evolution
advancement in knowledge of the physiological roles of sinapate esters will help achieve better understanding of the ecological and evolutionary significance of sinapate esters Arabidopsis thaliana
AN function has been conserved from bryophyte to angiosperm Arabidopsis thaliana; Marchantia polymorpha; Physcomitrella patens
PDATs evolved following divergence of cyanobacteria and other algae
adaptive changes in the genome can be pinpointed by comparing observed allele frequency changes to neutral evolution
more power to connect genotype to phenotype because we sample more of the total fitness landscape accessible only through combinations of genotypes that would be unrealistic in natural populations
differences in IDR between motile and non-motile microalgae may have been triggered by different evolutionary pressure on the two microalgae in terms of mobility
positive selection served as driving force in the divergent evolution of PDATs in green algae and plants
new beneficial functions through mutations enables adaptation to natural selection
genetic factors in evolutionary process of cultivated species may involve allele inheritance, emergence, exclusion, and recombination and their different combinations
differential expression can be coupled with protein divergence
genetic diversity generated by (ATNACK2, NACK2, TES, AT3G43210) might facilitate adaptation to stressful conditions
pathogen adaptation is fuelled by extensive genetic variability in populations
leaf succulence and tendrils have multiple genetic origins
watching evolution in action can explore forces maintaining variation
human demand on plant species has profound impact on evolution and ecology of plant species Erythroxylum coca; Erythroxylum novogranatense
Class III homeodomain leucine zipper genes containing steroidogenic acute regulatory protein-related lipid transfer (START) domain are plant specific and conserved across plants
growth-defense tradeoffs presumably evolved to increase plant fitness in rapidly changing environments
RPP1-like Ler haplotype was already present in Gorzów population in 1939 Arabidopsis thaliana
PDATs evolved before terrestrial plants diverged from charophyte green algae
divergent evolution of (ATPDAT, PDAT, PDAT1, AT5G13640) in plants and algae revealed positive selection as a driving force in the process
substantial variation in phenotypes is evident across diverse lineages
repeat expansions evolve more quickly than non-repetitive sequences
no species expressing Rca-α isoform only appear to exist in nature natural plant populations
change from a single sequence to both strands, or to a pair of alleles is more effective in evolution
phenotypes of interest can still be measured during course of these experiments
CLE and cytokinin signalling have undergone divergent evolutionary pathways
positive selection is a mode of natural selection on promoter sequences
capping CWIN activity by its inhibitor may have evolutionary advantages
centromere repositioning is major mechanism driving genome evolution
genetic architecture of drought tolerance may constrain evolution
intra-species divergence of miRNAs exhibits functional adaptation
drift in the context of multigenerational studies can cause genetic variation with the potential to impact fitness-related traits might be lost and unavailable for selection
multigenerational studies allowing genotypes to fail increase possible genetic variance and the range of resultant possible measured phenotypes
this approach might take prohibitively long time to fix given high outcrossing rates
transposable elements (TEs) contribute to phenotypic variation and evolution
substitutions of amino acids, exposure to new substrates, or exposure to new binding partners may be subject to natural selection
positive selection as a driving force in divergent evolution of (ATPDAT, PDAT, PDAT1, AT5G13640) may have increased functional importance of (ATPDAT, PDAT, PDAT1, AT5G13640) enzymes in land plants
allele recombination is hidden constant factor
evolution explains biodiversity
photorespiration may have evolved in C3 plants
C4 photosynthesis phenotype is partly underpinned by parallel evolution of structural genes
succulent leaves have evolved through different means
multigenerational studies have opened a window into process of evolution across many systems
even in predominantly selfing species allows new recombinants representing additional combinations of genotypes beyond the initially established population will be generated in sufficiently large studies
stochastic activity of any system component can be selected for and maintained through genetic co-option mechanisms
Transposable elements (TEs) are rich source of genomic variants that can be selected through evolution
(TOD1, AT5G46220) may have evolved in seed plant ancestor
organisms evolve in the presence of other organisms
top–down and bottom–up approaches observe outcome rather than the process of evolution
resulting change in genetic composition of the population can then be monitored by calculating allele frequencies in pooled or individual sequenced genomes
D genome shared mostly recent common ancestor with E genome Oryza sativa
evolution shapes molecular networks
selective sweeps shape genetic architecture
Malvaceae family may have evolved MIXTA genes to regulate seed epidermal cell differentiation
phenotypes of interest are usually fitness-related
population appropriately large allows genetic drift can also be excluded as a driver of population evolution
mutational robustness enhances evolvability of polyploid species
TE families with a low transposition rate can be maintained in evolution
different population sizes could influence TE evolution
chromothripsis-like rearrangement is particularly important in speciation
allele emergence is allele-detectable active evolutionary factor
Cleome and maize show conservation of TFs despite ∼140 million years of divergence Cleome gynandra; Zea mays
inter-species divergence of miRNAs exhibits functional adaptation
adaptation of soybean from an old MG to a new MG is evolutionary process
intraspecific variability in desiccation tolerance (DT) and dehydration tolerance (DhT) is essential for adaptation to changing environments
parasitism of plants evolved several times independently in three different lineages of Oomycota
transcription factors genome-wide signal contributes to trait divergence
loss of genetic variation due to drift could manifest similarly to Muller's ratchet
transposon insertion and transcript sequence change in RabGDIα gene represents evolutionary advantage resulting from transposon insertion Zea mays
plant cannot evolve different interactions independently
huge diversity in gall morphology evolved within complex ecological niches
closely related taxa were likely to have similar photosynthetic pathways
IP3R was lost by land plants
Wright's classic model assumes equally connected populations with constant migration rate
natural selection might contribute to maintain genetic variation for flowering time Arabidopsis thaliana
allele emergence is especially important to geographic evolution
allele exclusion is active factor underlying MG set changes
(ELIP, ELIP1, AT3G22840) genes have undergone considerable expansion in desiccation tolerance (DT) lineages
repressive effect of DNA methylation is acted upon by purifying selection
anthocyanin and proanthocyanin biosynthesis pathways have evolved metabolic evolution
natural environment already changing in the direction that it will continue to change makes conservation or crop improvement applications immediately interpretable conservation or crop improvement applications
functional distinction of variated GoFLA19 genes seems to have occurred after origin of allotetraploid species Gossypium hirsutum; Gossypium barbadense
desiccation tolerance (DT) and dehydration tolerance (DhT) vary across and within species
Nramp transporters are conserved across kingdoms
plant–microbe communication has evolutionary stability
plant–bacteria communication was shaped during evolutionary history
particularly important parameters are effective population size, effective recombination rate, and founding genetic diversity
this approach is better suited to selfers
cis-regulatory divergence causes differential expression
larger regions with multiple, linked loci each of small effect is sometimes manifested as fractionating QTL
association of TE insertions with genes in rice increases as they get older Oryza sativa
polyspermy barriers are evolved in eukaryotes, including plants
intimate associations are major drivers of evolution
polymorphic TE insertions in almond are older than evolutionary split from peach Prunus dulcis; Prunus persica
distinct (ATPDAT, PDAT, PDAT1, AT5G13640) and LCAT-like enzymes were probably present in common ancestor of plants, animals and fungi
extracellular regions of charophyte RLKs are subject to strong positive selection
floral colour shifts throughout angiosperm history illuminates fundamental evolutionary processes
35 new DTF and 36 new DTM alleles emerged from origin center to derived centers
genes diverged between indica and japonica subspecies during rice domestication Oryza sativa
evolutionary forces impact composition and structure of molecular networks
C4 photosynthesis has evolved in 66 plant lineages
small subset of the variation present at the experiment's start might end up causing phenotypic change as a result of selection
variation that is linked to causal loci under selection in a multigenerational experiment can decrease resolution of association mapping
drift, demographic history, and selection limit types and combinations of alleles that we can evaluate with extant material
breeding or conservation efforts can then make informed decisions about where genetic diversity should be maintained, or whether the effects of climate change can predict favoring fixation of one allele over another
genetic factors in evolutionary process of cultivated species is different from genetic factors in wild species
(ELIP, ELIP1, AT3G22840) genes have undergone less expansion in desiccation sensitive (DS) lineages
genic methylation has implications for plant gene and genome evolution
expected rate of change due to drift can be estimated from simulations using known founding genetic diversity and population size
sampling will always involve nonrandom set of the possible combinations of genetic diversity
evolutionary molecular plant–microbe interactions (EVO-MPMI) encompasses convergent evolution
temporal colour plasticity has evolved repeatedly in angiosperms
identification of additional mechanisms of transposon function will elucidate roles in producing phenotypic diversity
MTPSLs were likely acquired through horizontal gene transfer
natural genetic diversifications can be used to estimate evolutionary pressure
extra enzymatic steps may have offered evolutionary advantage
phytoene synthase mutations may have been among those that initiated origin of Polytoma species from Chlamydomonas-like ancestors
over-dominant selection is a mode of natural selection on promoter sequences
PcPCNA-like1 gene evolution after duplication could have resulted in Pc PCNA-like1 protein losing some functions of ancestral Pc PCNA Phaseolus coccineus
gene family sizes vary across lineages
just 3 generations is enough to develop genetic and phenotypic differentiation in common bean Phaseolus vulgaris
maintenance of genetic variation by selection, either through spatial or temporal fluctuations in selective pressure or phenotypic tradeoffs is termed balancing selection
genomics-based answers to important questions in evolutionary biology are within reach using plant reference systems as study organisms
divergence of promoter sequences between inbred lines might be the result of natural selection Oryza sativa
novel genetic elements have played significant role in organismal diversification and speciation
stress responsiveness of Sg4C sequences and evidence for Pt/PgMYB14 involvement in isoprenoid metabolism lead to postulation that Sg4C sequences contributed to adaptation of gymnosperms and conifers to changing environments Picea; Pinus
CCMs in present day cyanobacteria may have been aided by rapid evolution as a result of lateral transfer of large gene sets
Crassulacean acid metabolism (CAM) photosynthesis indicates a very ancient origin
one subclade of the Anacampseroid clade contains the genus Portulaca Portulaca
physical abiotic environment and biotic environment are forces of natural selection
natural environment constantly changing is already changing in direction that it will continue to change
NHL-RLKs show evidence of positive selection Coleochaete braunii
newly emerged alleles were not responsible for two new MG sets
characterization of the extent of intraspecific variability in desiccation tolerance (DT) and dehydration tolerance (DhT) will aid in untangling complex interactions of genotype by environment
C3 species maintained fitness during episodes of low atmospheric CO2
genetic diversity generated by (ATNACK2, NACK2, TES, AT3G43210) has been experimentally validated for many cases of adaptation to stressful conditions
heterostyly has evolved independently many times multiple independent evolutionary events
thermogenesis evolved several times independently, suggesting that in each instance a pre-existing signaling network gained control over respiratory metabolism
miR854 family is shared by plants and animals
subfunctionalization is proposed explanation for preservation of duplicate genes
distinctive, polar pattern of lignin deposition is evolutionary novelty shared by Cardamine species Cardamine
C4 photosynthesis has convergently evolved at least 60 times
gene mutation can result in subfunctionalization
DUF679-containing membrane proteins evolved in green plant clade (Viridiplantae) Viridiplantae
multigenerational studies with sufficient population sizes can exclude drift and demographic history as major drivers of change
population genetic signatures of balancing selection, such as skewed allele frequency distributions have multiple interpretations, such as demographic history changes
weak linkage between compartmentalized subsystems permits adaptation to environmental changes with limited effects on each other's functionalities
lineage-specific genome dynamics may have played significant role in evolutionary diversification of ferns
genomic novelty contributes to evolutionary success of angiosperms
orthologues of NS in Chlamydomonas and Physcomitrella are shorter, similar to prokaryotic homologues Chlamydomonas; Physcomitrella
chromalveolate evolution is becoming better understood understanding of chromalveolate evolution chromalveolates
selection is facilitated in the direction of major axes of phenotypic variation
land plants (Embryophyta) evolved from green algal ancestor
genomic imprinting is proposed to be in continuous evolution
recurrent lineage-specific whole genome duplications (WGDs) of different ages linked to species richness of angiosperms
natural variation in non-coding genomic regions has played a major role in evolution of life history strategies across the Brassicaceae family Brassicaceae
aeschynomenoid form of nodules characterizes dalbergioid clade
structures beneath lunate cells may represent primitive form of digestive glands Nepenthes rafflesiana
evolution may have selected plants with coordinated responses
primary metabolism evolved early and was conserved across all known plants
variation that is linked to causal loci under selection in a multigenerational experiment can facilitate identification of larger regions with multiple, linked loci each of small effect
plant-microbe interactions led to evolution of highly complex microbial communities
environmental factors can drive evolutionary changes through heritable epigenetic modifications Oryza sativa
functionally co-dominant promoter alleles increases the efficiency of fixing beneficial alleles
horizontal gene transfer mechanism could have occurred with phosphoribulokinase (PRK, AT1G32060) gene Euglena gracilis
evolutionary divergence relates to phylogenetic relationships for Form 1 (L8S8) Rubisco large subunit
bacteria may employ together with implementation of a CCM to achieve evolutionary adaptation and acclimation
C4 pathway and Crassulacean acid metabolism (CAM) pathway evolved independently in well over two dozen distinct lineages
individuals within populations are subject to mutation
myosin V is more closely related to plant myosin XI Schizosaccharomyces pombe; Arabidopsis thaliana
heterostyly is found in at least 200 genera from 28 angiosperm families
Arabidopsis would have evolved without selection pressure for restricting GA access to shoot apex Arabidopsis thaliana
latitudinal variation is plausible result of natural selection
coevolution is viewed as powerful process generating evolutionary change
conditions under which shifting balance theory may work continue to be analysed and discussed in literature
S-loci have been identified from increasing number of taxa with independently evolved heterostyly
ion channel families are conserved across land plants
PcPCNA gene duplication could have resulted in PcPCNA-like1 gene evolving separately from PcPCNA1 gene Phaseolus coccineus
presence of different and multiple Rubiscos within an organism can be viewed as specific result of adaptive evolution to particular ecological environments
gene family sizes may have important functional outcomes related to adaptation or speciation
component submatrices allow exploration of evolutionary factors
qFt-a-20-01 is new locus
specialized metabolites have evolved under selection pressure imposed by specific combinations of harmful and beneficial interacting organisms
different environmental constraints could influence TE evolution
domatia have evolved independently hundreds of times across the tree of life
divergence of underlying genes and their expression patterns during evolution potentially alters functions
plants have evolved different reproductive strategies
landscape metaphor was framework to advance theoretical grounds for evolution
convergent evolution of bird-pollinated floral phenotype raises questions about whether the same gene systems are involved in all cases
more expanded gene families in kenaf and flax is likely to be caused by recent WGDs
allele recombination importance may especially be due to various epistatic effects causing extra increments among recombined allele collectives
beneficial function of fungal endophytes was independently acquired via convergent evolution
watching evolution in action can study more complex allelic interactions
most obvious advantage of direct observation of evolution in a resurrection design is that environmental conditions in an evolution experiment can be measured and directly correlated with phenotypic or genetic change
C3 photosynthesis is basal state in photosynthetic evolution Flaveria
two distinct ppc clades in flowering plants indicates that these two lineages evolved independently of each other
ancestral horizontal transfer of phytochelatin synthase (PCS) from cyanobacterium to early hornwort might not be excluded in principle hornwort evolution Phaeoceros laevis
plastidic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene relationship between Euglena gracilis and dinoflagellates is presumably by horizontal gene transfer Euglena gracilis; dinoflagellates
PCNA remained conserved in function, structure, and sequence
NS gene transfer to nucleus occurred at rather late stage of streptophyta evolution streptophyta
transcript expression data suggest that Sg4C sequences have diverged functionally to some extent
genetic variability between individual bulbils and between bulbils and mother plant could be important in allowing asexually propagated species to adapt to changing environmental conditions Agave
DNA methylation can act as powerful force in shaping genetic diversity
multiple heat shock transcription factors (HSFs) evolved with functional diversification and/or genetic redundancy
deep branching within the family, and particularly within the order Lecanorales must have occurred very early, most probably during Cretaceous
global CO2-concentrating mechanism of the Anthropocene potentially compromises selective advantages of CAM
large changes that occur early in adaptive radiation will show greatest difference between TIPs versus PIC analyses
annotation of NS/ (DHNS, ECHID, AT1G60550) as naphthoate synthase is derived from facultative anaerobic bacteria and cyanobacteria bacteria; cyanobacteria
dormancy cycling may be less relevant for fitness in hot and dry conditions Arabidopsis thaliana
environmental factors drive evolution of C4 photosynthetic traits
role of PcG proteins changed during evolution to match novel needs
phytochelatin (PC) production capability under metal stress is ancestral (plesiomorphic) character
(MIR319, MIR319B, AT5G41663) and (MIR159, MIR159A, AT1G73687) evolved from common ancestor
genetic redundancy occurs as a consequence of gene duplication
Group I WRKY proteins are the ancestors to other groups of WRKY proteins
similarity of (H3.3, HTR8, AT5G10980) dynamics in sexual reproduction between plants and animals probably does not result from conservation
A. thaliana LRL proteins have functionally diverged from LRL proteins in early diverging plants Arabidopsis thaliana; Marchantia polymorpha; Chara braunii
reduced growth leads to fitness advantage of being well protected from pathogens
wounding-induced JA-PpERF109-PpNLR1 pathway may explain negative selection of the GPA-resistant gene during peach evolution
many Crassulacean acid metabolism (CAM) lineages are scattered across many monocot and dicot families
Darwin's closing statement is still true and as important
evolutionary model can explain chemical diversity made by organisms
Ludwig Plate campaigned for revival of the original 'Darwin's Darwinism'
evolution of stable autotetraploidy preadapts meiosis to higher ploidy Arabidopsis arenosa
Omega class (ATGSTU24, GST, GSTU24, AT1G17170) evolved in animals
evolutionary theory predicts that individuals within populations
Wright envisioned that pleiotropy and epistasis would generate design constraints leading to rugged fitness landscapes
the results of this study will aid in clarifying the origins of C4 and Crassulacean acid metabolism (CAM) photosynthesis within the Portulacaceae
Wright's shifting balance theory was among first to recognize importance of spatial structure for local evolutionary dynamics
conservation of mechanisms for optimal size under spatial constraints highlights importance for cellular and organismal fitness
infinitesimal and geometric models were proposed by Fisher
dioecy may be influenced by other ecologic factors such as allocation of resources for male and female functions, sexual selection, seed dispersal, pollination, and predation
coding mutations contributed to phenotypic evolution
phytochelatin (PC) synthesis might represent remnant of Devonian period
alleles could then become fixed through natural selection in populations in which they are suited to a new photosynthetic mode
detailed phylogenetic analysis of grasses enables identification of suitable sister species for RNA-Seq comparison
identified increases in PEPC mRNA expression typical of CAM-specific isogenes might indicate parallel rather than convergent evolutionary tracks for these specific gene lineages
natural selection accounts for origin of species
mechanisms responsible for DNA integrity show remarkable evolutionary conservation across kingdom borders
seed dormancy displays strong adaptive plasticity to geographic locations and seasonal conditions Arabidopsis thaliana
phylogenetic and sequence analysis identified evolutionarily conserved (ATWRKY33, WRKY33, AT2G38470) homologues in tomato and rice plants Solanum lycopersicum; Oryza sativa
(ATWRKY33, WRKY33, AT2G38470) proteins are evolutionarily conserved WRKY transcription factors
scaling of gene expression with cell size underscores evolutionary significance
chromalveolate phosphoribulokinase (PRK, AT1G32060) gene was suggested to be derived by horizontal gene transfer from green algae chromalveolates; green algae
maintenance of duplicated genes within Sg4C over tens of millions of years suggests selective advantages derived from additional gene copies
specific signaling network may differ between distinct events when thermogenesis evolved
organism size has been under continuous evolutionary pressure evolutionary pressure
insertion region similarity between Euglena gracilis and chromalveolate phosphoribulokinase (PRK, AT1G32060) suggests either horizontal gene transfer or common origin Euglena gracilis; chromalveolates
conifers (coniferales) appeared relatively early in evolution of gymnosperms
widespread duplication invoked as important mechanism for MYB gene evolution
conservation of (H3.3, HTR8, AT5G10980) dynamics in sexual reproduction between plants and animals would be surprising because plants separated from animals around 1.1 million yr ago from ancestors producing isomorphic gametes
cumbersome procedure of eliminating synergids might nonetheless have been selected for in evolution Arabidopsis thaliana
WUSCHEL (PGA6, WUS, WUS1, AT2G17950) and (WOX5, WOX5B, AT3G11260) arose after divergence of gymnosperms and angiosperms
green and red algae originated from same single ancestor
heritability without differential fitness results in genotypes subject to evolution by other processes
internal structure of starch granules is highly conserved as evolutionary feature
amber fossils have shown that some modern lichen genera, and probably even species, were already present in the Tertiary
root carbon and nitrogen stoichiometry reflects evolutionary adaptation strategies
phytochemical diversity evolves over time in different plant genera
majority of functionally relevant protein isoforms tend to be sustained during evolution
convergent evolution of pod dehiscence occurs in warm-season legumes Glycine max; Glycine soja
gliding motility is key molecular adaptation
weak covariances will cause correlated responses over several generations in other traits not under selection
evolutionary constraints of Rubisco CO2/O2 specificity (SC/O,opt) become weak with increasing leaf protein content per area (PAREA)
convergent response of both IB and ID Rubiscos to high intracellular CO2 could be related to similar extent of time that effective carbon concentrating mechanisms (CCMs) may have been operating across evolutionary timescales
polyploidization increases evolvability
conserved mechanisms among Viridiplantae are suggested by findings in C. reinhardtii Chlamydomonas reinhardtii
individual Fusarium oxysporum lineages accumulate genomic changes over time Fusarium oxysporum
evolutionary constraints of Rubisco CO2/O2 specificity (SC/O,opt) become weak with decreasing total leaf conductance (gtot400)
understanding of C2 pathway evolution could clarify why C4 plants evolved with such high frequency
trade-off between dormancy and longevity may represent adaptive mechanism to maximize fitness under contrasting environments Arabidopsis thaliana
C4 photosynthesis is assumed to have evolved in hot climates
two orthologues in Quercus suber database are included in same (bHLH, AT5G51780) clade Quercus suber
Selective sweep at the (SHM1, SHMT1, STM, AT4G37930) locus was driven by positive selection for (SHM1, SHMT1, STM, AT4G37930) promoter variants that eliminate expression in Arabidopsis thaliana leaves Arabidopsis thaliana
reversibility of epigenetic silencing could help maintain capacity to evolve to sub- or neo-functionalization among duplicates Arabidopsis thaliana
microRNA (miRNA) loci are under purifying selection Arabidopsis thaliana
epigenetic modifications in plants are of very limited significance for evolutionary processes Arabidopsis thaliana
plant mitophagy has followed different evolutionary path
some GPI-APs, receptors and signaling ligands have some common evolutionary origin