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gene regulation

47373 relationships annotated with this phrase. Showing first 500 of 47373.
Source entity Relationship Target entity Species
MYB, WD40, (bHLH, AT5G51780) NAC, WRKY, and (AtbZIP, bZIP, AT1G68880) may play important roles in regulatory network Quercus dentata
HvAMS expression pattern in barley indicates AMS is also regulated by other currently unknown transcription factors Hordeum vulgare
expression line enables tissue-specific gene expression of the reporter and the effector Arabidopsis thaliana
three deletions and five SNP sites in lncRNA1 promoter caused higher expression level of LncRNA1 in 'Zhaoshouhong' Prunus persica
alternative splicing is involved in regulatory processes
48 important TFs identified from brown-coded co-expression module Quercus dentata
expression of SE (AtDRB1, DRB1, HYL1, AT1G09700) and (ASU1, ATDCL1, CAF, DCL1, EMB60, EMB76, SIN1, SUS1, AT1G01040) could be under either direct or indirect control of (BZR1, AT1G75080) Arabidopsis thaliana
(ATMYB35, MYB35, TDF1, AT3G28470) and (AMS, AT2G16910) co-expressed suggests important role of TDF1–AMS complex in regulating (AtMYB103, ATMYB80, MS188, MYB103, MYB80, AT5G56110) expression Arabidopsis thaliana
cognate promoter consisting of six 52 bp lac operator (Op6) copies enables tunable expression of downstream gene based on inducer concentration Arabidopsis thaliana
(H3.3, HTR8, AT5G10980) was enriched in actively transcribed genes Arabidopsis thaliana
Sph/RY motif is enriched in promoter and intron regions of LAFL genes
MYB family members most members (11) belonged to subnetwork of (ANS, LDOX, TDS4, TT18, AT4G22880) and (ATCHS, CHS, TT4, AT5G13930) Quercus dentata
(AGO7, ZIP, AT1G69440) knockdown destabilizes/disrupts regulatory networks and reverses outcomes of several miRNA-mRNA interactions Nicotiana attenuata
sugar-responsive genes includes transcription factors Arabidopsis thaliana
host-specific infection strategy is mediated through transcription-based control of essential effector genes Colletotrichum orbiculare
FTSZ1-11 line shows significant reduction in native (ATFTSZ1-1, CPFTSZ, FtsZ1, FTSZ1-1, AT5G55280) gene expression Nicotiana tabacum
MpGLK functions as transcriptional activator of the Mp (AtMAX2, MAX2, ORE9, PPS, AT2G42620) gene Marchantia polymorpha
transcription factors are highlighted as gene expression and epigenetics modulators Populus trichocarpa
SE and (AtDRB1, DRB1, HYL1, AT1G09700) are identified in list of (BZR1, AT1G75080) target genes Arabidopsis thaliana
Ib (bHLH, AT5G51780) transcription factors regulate (HTB4, AT5G59910) expression Arabidopsis thaliana
noncoding RNAs (ncRNAs) play important roles in regulating gene expression
gene network between (ATMYB35, MYB35, TDF1, AT3G28470) and (AMS, AT2G16910) is not as simple as inclusion relationship Hordeum vulgare; Arabidopsis thaliana
ACGT-containing element cis-element is located in downstream promoters of EARLY FLOWERING 4 and (FHY1, FRY1, PAT3, AT2G37678) HOMOLOG
FBS motif cis-element and ACGT-containing element cis-element in downstream promoters of EARLY FLOWERING 4 and (FHY1, FRY1, PAT3, AT2G37678) HOMOLOG are close to each other (less than 20 bp away)
QdMYB QD01G020890 gene product could bind to cis elements in promoter region of gene QdCHS QD06G044950 Quercus dentata
transgenic plants expressing full-length WT ( (PAP3, PIF3, POC1, AT1G09530) WT), nonphosphorylatable ( 6A) and phospho-mimicking ( 6D) were under control of native (PAP3, PIF3, POC1, AT1G09530) promoter Arabidopsis thaliana
chromatin structure is key in regulation of gene expression
whole-genome duplications (WGDs) can increase expression of genes that underpin critical traits
expression levels of MpPIN2, MpKAI2A, MpKAI2B, MpMAX2, and MpCPS were not significantly different in MpPUB9-overexpressors Marchantia polymorpha
trans-acting effects of climate-associated DMRs on environmentally responsive genes Fragaria vesca
effector genes are specifically overexpressed upon KMT1 silencing Leptosphaeria maculans
pleiotropic effects of a flowering time regulator (FLA, FRI, RSB7, AT4G00650) affects expression of (AGL25, FLC, FLF, RSB6, AT5G10140) Arabidopsis thaliana
higher methylation variation and number of gene- and TE-related DMRs in the field suggest a potential association between natural environmental conditions and regulation of gene expression Fragaria vesca
(ATPDX1.1, PDX1.1, AT2G38230) expression is induced by indole acetic acid (IAA) Arabidopsis thaliana
edges with r ≤ −0.9 in biotic stresses are more abundant than edges with r ≤ −0.9 in abiotic stresses Oryza sativa
laser-captured tissue sections or cells sorted by fluorescent marker expression enables refinement of knowledge of gene activity at cell-type-specific and single-cell level
OsmiR396d has 12 putative targets Oryza sativa
ectopic expression of AtTDF1 regulated by (DYT1, AT4G21330) promoter confirms need for precise spatial and temporal expression of (ATMYB35, MYB35, TDF1, AT3G28470) gene Arabidopsis thaliana
yeast two-hybrid (Y2H) assays performed to verify regulatory relationships among key TFs and structural genes Quercus dentata
SlTCP24/29 and CLAUSA may have feedback regulation Solanum lycopersicum
inducible overexpression of (bHLH, AT5G51780) transcription factors enhances (HTB4, AT5G59910) expression Arabidopsis thaliana
(HTB4, AT5G59910) transcription is regulated by age and Fe deficiency Arabidopsis thaliana
presence of (H2A.Z, HTA11, AT3G54560) in gene bodies is associated with transcriptional repression
(SPL3, AT2G33810) was strongly up-regulated in irAGO7 during the early stages of colonization Nicotiana attenuata
SUSIBA1 and SUSIBA2 is members of plant-specific WRKY family
GtMYB3 activates F3′5′H promoter Gentiana triflora
(AMS, AT2G16910) expression in barley suggests some other transcription factors may also take part in regulating (AMS, AT2G16910) expression Hordeum vulgare
(ATCHS, CHS, TT4, AT5G13930) and (ANS, LDOX, TDS4, TT18, AT4G22880) gene promoter regions both carry MYB binding sites Quercus dentata
DNA methylation influences gene expression
different sets of effector proteins are regulated via transcriptional regulation Colletotrichum orbiculare
HvTDF1 might be involved in regulating biological processes affected in hvtdf1 mutant Hordeum vulgare
(AtMYB103, ATMYB80, MS188, MYB103, MYB80, AT5G56110) is downstream of (AMS, AT2G16910) Arabidopsis thaliana
(AMS, AT2G16910) or (ATMYB35, MYB35, TDF1, AT3G28470) can bind to MYB80 promoter and activate expression (AtMYB103, ATMYB80, MS188, MYB103, MYB80, AT5G56110) Arabidopsis thaliana
promoter methylation may have positive effects on expression
198 related TFs (transcription factors) examined for brown-coded module Quercus dentata
nuclear sphingolipids can modulate expression of genes involved in various physiological processes Arabidopsis thaliana
novel screening assays could support identification of genetic mechanisms controlling dynamic responses to fluctuating environmental conditions
reduced DNA methylation levels may release transcriptional repression of associated genes Phyllostachys edulis
genes with no polymorphisms might be expressed differently as indirect effect of mutation in a trans-acting factor elsewhere in the genome Zea mays
repeat Ser insertions can enhance transcriptional regulatory activity Malus domestica
changes in chromatin structure were recently linked to regulation of GA 2-oxidase gene in Arabidopsis root meristems Arabidopsis thaliana
(chr13, PIE1, SRCAP, AT3G12810) inactivation results in misregulation of 627 to 938 genes Arabidopsis thaliana
deletion of ftsZ1-2 gene did not affect (ATFTSZ1-1, CPFTSZ, FtsZ1, FTSZ1-1, AT5G55280) transcript abundance Physcomitrella patens
(AtbZIP, bZIP, AT1G68880) WRKY, and NAC may participate as secondary regulators Quercus dentata
induced endogenous HSC70.4 expression was detected in hsc70.1 mutant Arabidopsis thaliana
reduced expression of ZmTFCB in the (ASG6, CRK2, AT1G70520) mutant was most likely caused by unbalanced cis-trans regulation of ZmTFCB when one line with more copies introgressed into single copy line Zea mays
silencing of KMT1 leads to overexpression of > 30% of genes located in TE-rich environments Leptosphaeria maculans
combining single-cell RNA-Seq and single-cell proteomics data could gain insight of genetic regulation of protein content at the single-cell level
Sph/RY motifs are consistent with direct regulation by B3 transcription factors
miR473 overexpression reduced colonization by significantly reducing ALKK, (PAP12, PDE225, PTAC7, TAC7, AT5G24314) and GAI1-DELLA transcript levels
GO term analysis of downregulated genes from hvtdf1 mutant shows several key biological processes have been affected in hvtdf1 mutant Hordeum vulgare
variant spliceosomes contribute to gene regulation in tissue/cell-specific manner
chromatin condensation state directly impacts gene expression
methylation of gene promoters regulates gene expression
heritable epigenetic variation has functional role Fragaria vesca
regulation during root oxygen loss barrier formation differs between apical and basal parts of roots
small RNAs are recognized as key genetic and epigenetic regulators of development
specific gene regulatory networks operate through both genetic and epigenetic signals Phyllostachys edulis
Three osmotin protein family genes had a similar RNA expression pattern as HvTDF1 Hordeum vulgare
yeast one-hybrid (Y1H) assays performed to verify regulatory relationships among key TFs and structural genes Quercus dentata
feedback regulation in the CLAUSA pathway may regulate SlTCP29 Solanum lycopersicum
(AMS, AT2G16910) ortholog gene is downregulated in hvtdf1 mutant Hordeum vulgare
(ATMYB35, MYB35, TDF1, AT3G28470) and (AMS, AT2G16910) are unable to work alone in regulating (AtMYB103, ATMYB80, MS188, MYB103, MYB80, AT5G56110) Arabidopsis thaliana; Hordeum vulgare
reporter gene mTurquoise2 is controlled by pOp6 promoter Arabidopsis thaliana
transcription of (SLG1, AT5G08490) and PSY3 isoforms is coordinated Solanum lycopersicum
transgene expression causes slight reduction in native gene expression Nicotiana tabacum
miR473 targets genes related to GA signaling and fatty acid metabolism
Cf-9B resistance pathway activation in young plants is in line with Cf-9B expression not being developmentally regulated Solanum lycopersicum
OPM1 and OPM2 expression is regulated by unknown regulatory mechanisms Hordeum vulgare
expression of ZmTFCB is significantly negatively associated with CNVs Zea mays
transcription factors (TFs) regulate nuclear gene expression
many transposons can serve as promoters or enhancers Zea mays
transcript levels of RAP2-7, (AP2, AtAP2, FL1, FLO2, AT4G36920) (APL, WDY, AT1G79430) and (AtPED2, ATPEX14, PED2, PEX14, AT5G62810) were low in irAGO7 plants Nicotiana attenuata
copy-neutral structural variants can affect gene expression by changing regulatory elements or creating positional effects
KN1 target (ATGA2OX1, GA2OX1, AT1G78440) was up-regulated in leaves of dominant knox mutants Gn1-R and Lg3-O Zea mays
(AtPIF4, PIF4, SRL2, AT2G43010) expression is up-regulated in (ATPDX1, ATPDX1.3, PDX1, PDX1.3, RSR4, AT5G01410) mutant in presence of sucrose Arabidopsis thaliana
LOC_Os03g57200 has 93 high-correlation edges Oryza sativa
LOC_Os01g13570 has positive edge to SOUL heme-binding protein Oryza sativa
expression of photosynthetic genes was suppressed in P– (inorganic phosphate-deficient) roots
two subnetworks inferred for brown-coded module with TFs as potential regulators Quercus dentata
epigenetics is defined as process affecting gene expression without a change in the DNA sequence
co-expression network analyses revealed specific modules with strong correlation with genotype in all three root zones Hordeum vulgare
histone variants play crucial roles in gene expression
gene regulation hypothesis suggests that regulatory loci may exert environmentally dependent phenotypes
mobilization of transposons driven by stress may reconfigure gene regulatory network by inserting close to key relevant genes Phyllostachys edulis
(ATGA2OX1, GA2OX1, AT1G78440) was up-regulated in Lg3 and (AtSIP1, RS1, SIP1, AT1G55740) dominant mutants Zea mays
(ATPDX1.1, PDX1.1, AT2G38230) and (ATPDX1, ATPDX1.3, PDX1, PDX1.3, RSR4, AT5G01410) are regulated differently gene expression Arabidopsis thaliana
expression of 214 transcription factors in (AQC1, HPS7, TPST, AT1G08030) roots was altered relative to wild type Arabidopsis thaliana
elaborately branched networks of regulons are induced by stimulus
unidentified Guy11 effector(s) may bind directly or indirectly to cis-elements Oryza sativa; Magnaporthe oryzae
elimination of introns could potentially release translational regulation Oryza sativa
class B-Hsfs may act as repressors of target gene expression
transcript expression of a pair of Golgi-localized putative pectinmethyltransferases is strongly correlated with (GAUT1, LGT1, AT3G61130) expression
(ATCHS, CHS, TT4, AT5G13930) and (ANS, LDOX, TDS4, TT18, AT4G22880) genes are hubs within potential regulatory relationships Quercus dentata
F3′5′H promoter induces petal-specific expression Gentiana triflora
SG19 MYB-binding site in EOB1 promoter is located 450 bp before START codon of EOB1 Petunia axillaris
LTR regions functioning as promoters, enhancers, or destroyers govern expression of neighboring genes
silencing of (PAT24, TIP1, AT5G20350) ;1 would not influence transcript levels of genes upstream in the gene hierarchy Solanum lycopersicum
promoters of OLEIC ACID-REQUIRING1 (OLE1) and (AAD6, FTM1, HUP7, SAD6, AT1G43800) genes share low-oxygen-responsive cis-activation elements
sparse cluster of negative edges is shown in coexpression network visualization Oryza sativa
(ERF017, ERF17, AT1G19210) allele reveals a regulatory mechanism associated with its natural variation Malus domestica
lincRNAs found a short distance from protein-coding genes could modulate expression of their neighbors by actively recruiting activators, repressors, and epigenetic modifiers Glycine max
GFP reporter gene was fused to wild-type or deletion mutants of (MIR319, MIR319B, AT5G41663) promoter Oryza sativa
TC-rich repeats and Box-W1 motif do not function redundantly in (MIR319, MIR319B, AT5G41663) promoter regulation Oryza sativa
14 transcription factors with significant edges include Nuclear Factor Y, G2-like, and (bHLH, AT5G51780) TF families Oryza sativa
GROWTH REGULATING FACTOR 6 (14-3-3lambda, AFT1, GRF6, AT5G10450) is one of OsmiR396d targets Oryza sativa
abscisic acid (ABA) has selective inhibitory effect on gene expression in embryo axis Medicago truncatula
93 unique transcripts are regulated by RTCS constitutively Zea mays
SNPs and INDELs in differentially expressed genes discriminate from indirect effects of trans-acting factors in genome Zea mays
regulatory components found in plants such as Arabidopsis and rice have been attenuated or lost in Hakea prostrata Hakea prostrata
microRNA (miRNA) play pivotal roles in various biological processes
Lsi1 expression was not affected by external boron level Oryza sativa
introns may be recruited in post-transcriptional control Oryza sativa
metabolism is regulated transcriptional control
miR156 is microRNA
(AtBOR1, BOR1, AT2G47160) is regulated at posttranscriptional regulation in response to external boron change Arabidopsis thaliana
OsBOR1 protein seems to be enhanced at protein level Oryza sativa
RH50 is coregulated with (GUN1, AT2G31400) Arabidopsis thaliana
OsMADS8 RNAi line shows increased expression of OsTGA10 Oryza sativa
candidate functional SNPs may be from microRNAs and microRNA-target complementary sites
high tissue-specific lincRNA expression supports idea of their highly specialized, possible regulatory functions Glycine max
(MIR319, MIR319B, AT5G41663) promoter region contains hormone-responding elements Oryza sativa
signaling pathways may finally lead to alterations in gene expression
posttranscriptional regulation of lipid metabolism perhaps through selective RNA translation and protein turnover
NUCLEAR FACTOR Y (NF-Y) transcription factors has 79 significant edges Oryza sativa
protein absence was not a regulatory effect Zea mays
(GF14 UPSILON, GRF5, AT5G16050) mRNAs are not targeted by miR396 Arabidopsis thaliana
(GF14 UPSILON, GRF5, AT5G16050) 35S:MIR396b plant should further reduce levels of total GRF mRNAs Arabidopsis thaliana
expression levels of the other four MdBT genes changed MdBT gene expression
hydroxycinnamoyl CoA:shikimate/quinate hydroxycinnamoyltransferase (HCT, AT5G48930) may require regulation at multiple levels
HAT and HDAC proteins are associated with actively transcribed genes
constitutive overexpression of Maize (ABI3, AtABI3, SIS10, AT3G24650) lacking B3 domain results in upregulation of subset of ABI3-regulated genes Zea mays
phS:yfp gene in transformants is sex inducible Volvox carteri
OsCKX4 promoter contains one auxin response element Oryza sativa
microRNAs (miRNAs) regulate and fine-tune gene expression
wild-type or mutant promoter was expressed at similar level under mock-treated condition Oryza sativa
LeHT1 is preferentially expressed in resistant (R) plants Solanum lycopersicum
light quantity and light quality signals should show at least partial convergence in control of target genes Arabidopsis thaliana
genetic studies have shown that transcriptional control is very important to phenotype manifestation
phytochromes do not effect gene regulation via direct DNA binding Arabidopsis thaliana
increased Pseudomonas syringae pv. maculicola ES4326-induced pectin methylesterase (PME) activity in (ATPME3, OZS2, PME3, AT3G14310) and (PME12, AT2G26440) mutants possibly due to overcompensation for loss of these (PMES, AT4G10050) Arabidopsis thaliana
down-regulation of the transcript levels of several known CAM-associated genes is specific effect that could be the result of metabolic feedback regulation of gene expression and/or transcript stability Kalanchoë fedtschenkoi
chromatin structure changes by histone modification can change target gene expression
EMBRYONIC FLOWER1 (EMF1, AT5G11530) binds DNA Arabidopsis thaliana
coexpression analysis of Arabidopsis under several types of biotic stress at early stages of infection revealed positive correlation between TIP-AQP, hexose transport, and hormone pathways Arabidopsis thaliana
impairment in (EAL1, SGR7, SHR, AT4G37650) expression levels in (ATPDX1, ATPDX1.3, PDX1, PDX1.3, RSR4, AT5G01410) is consequence of mutation in (ATPDX1, ATPDX1.3, PDX1, PDX1.3, RSR4, AT5G01410) Arabidopsis thaliana
gene expression is regulated epigenetically epigenetic regulation
(AOX1D, AT1G32350) may be subject to redox or metabolic regulation at translational and post-translational levels
PXR receptor controls expression of CYP450 genes
large insertion into promoter of S. lycopersicum CXE1 resulted in much higher expression of SlCXE1 Solanum lycopersicum; Solanum pennellii
partial AuxRE (TGTCTc) is located in promoter region of (ATPDX1, ATPDX1.3, PDX1, PDX1.3, RSR4, AT5G01410) Arabidopsis thaliana
parallels observed between lincRNA and transcription factor expression can suggest similar roles of lincRNAs Glycine max
gene expression is tightly regulated gene regulation
heritable epigenetic changes in gene expression includes accumulation of miRNAs in sperm Mus musculus
unique pattern of (PAT24, TIP1, AT5G20350) ;1 expression correlation was not observed for other TIP genes Arabidopsis thaliana
flv4-2 operon expression is tightly regulated by CO2 levels Synechocystis sp. PCC 6803
Z1C genes identified here are also likely O2 independent Zea mays
enhanced expression of stem cell transcription factor PLTs is hypothesized to affect expression of a large number of transcription factors Arabidopsis thaliana
expression pattern of (AtSAMS3, MAT4, MTO3, SAMS3, AT3G17390) is important for predominant biological roles of (AtSAMS3, MAT4, MTO3, SAMS3, AT3G17390) Arabidopsis thaliana
candidate functional SNPs may be from protein-DNA binding sites
identical predicted ORFs of GA2oxA9 between mutants and wild types indicates that changes in gene expression most probably were responsible for mutant phenotype
SA-responsive element (TCA element) was identified in (MIR319, MIR319B, AT5G41663) promoter Oryza sativa
Minor QTL genes in pyramiding strategy have expression that can be managed Oryza sativa
in cis interactions is mechanism involved in gene regulation
(MFP1, AT3G16000) (MAR BINDING FILAMENT-LIKE PROTEIN 1) is chloroplast phosphoprotein Arabidopsis thaliana
yabby15 was up-regulated in Lg3 and (AtSIP1, RS1, SIP1, AT1G55740) dominant mutants Zea mays
sequence TAACAAA is located immediately upstream of (ATPDX1.1, PDX1.1, AT2G38230) Arabidopsis thaliana
LOC_Os11g26780 had one significant positive edge with another dehydrin gene Oryza sativa
RPL27aC expression levels in the ovule regulate expression of one or both (RPL27A, RPL27AB, uL15y, AT1G23290) paralogs Arabidopsis thaliana
(PXY, TDR, AT5G61480) regulates (ACO4, EAT1, EFE, AT1G05010) transcription Oryza sativa
long noncoding RNAs (lncRNAs) are involved in homeobox gene expression
endosperm-expressed C1 genes not up-regulated in FIS-PRC2 mutants
unique pattern of (PAT24, TIP1, AT5G20350) ;1 expression correlation was not observed for other STP genes Arabidopsis thaliana
step-wise silencing and gene transcript level analyses indicated that Lin6 is upstream of LeHT1 Solanum lycopersicum
(ATPDX1.1, PDX1.1, AT2G38230) expression is repressed by sucrose Arabidopsis thaliana
coexpression patterns is hallmark of coordinated expression regulation mediated by presence of particular motif or motif combination
gene expression plays a role in regulation of cellular mechanisms influencing developmental and salt-induced ploidy levels Mesembryanthemum crystallinum
kinetic patterns can be correlated with gene function
PIN proteins exhibit synergistic interactions in pin mutants Arabidopsis thaliana
(ATPIN3, PIN3, AT1G70940) expression is down-regulated in root tips Arabidopsis thaliana
signaling pathways lead to changes in gene expression
mutation of the (AQC1, HPS7, TPST, AT1G08030) gene caused many transcription factors to be up-regulated or down-regulated Arabidopsis thaliana
ORR2 and ORR3 induce β-galactosidase (LacZ) reporter gene expression driven by OsCKX4 promoter Oryza sativa
dexamethasone-inducible promoter controls expression of transcription factor couple from Antirrhinum Solanum lycopersicum
OsmiR396d controls yield traits through different downstream targets Oryza sativa
transcriptional network motifs are shared between eukaryotes and non-chromatin organisms such as bacteria
deletion of any of the (ATFTSZ1-1, CPFTSZ, FtsZ1, FTSZ1-1, AT5G55280) genes most affected transcript abundances of (ATFTSZ2-1, FTSZ2-1, AT2G36250) Physcomitrella patens
deletion of the (ATFTSZ1-1, CPFTSZ, FtsZ1, FTSZ1-1, AT5G55280) genes led to reduced transcript levels of (ATFTSZ2-1, FTSZ2-1, AT2G36250) Physcomitrella patens
chosen promoters lacked specificity
miR1317 was predicted to target transposon protein gene (LOC_Os10g20480) Oryza sativa
interference with YHB:YHB homodimer activity effects suppression of gene expression
sole presence of histone marks such as H3K27me3 does not allow conclusion that target gene relies on epigenetic mechanisms for bistable regulation
tail-to-tail gene orientation intergenic space does not contain promoter Arabidopsis thaliana
methanol (MeOH) down-regulates expression of pathogen-related GhPMEI3 Gossypium hirsutum
(AGL25, FLC, FLF, RSB6, AT5G10140) (AGL9, SEP3, AT1G24260) and AG genes were hardly regulated by NF-YC
(AGL91, AT3G66656) not repressed by FIS-PRC2
deacetylation is associated with transcriptional suppression
MtMYB5 regulates a broader set of genes than MtMYB14 Medicago truncatula
negative edges in biotic stresses are more abundant than negative edges in abiotic stresses Oryza sativa
genes harboring the same upstream motif may have similar function Arabidopsis thaliana
C2 genes constitute majority of type I MADS-box genes up-regulated or down-regulated in paternal-excess or maternal-excess crosses
PIN proteins exhibit synergistic interactions cross-regulation of PIN gene expression Arabidopsis thaliana
small non-coding RNAs (sRNAs) play essential roles in regulating molecular machinery of eukaryotic cells
(CLPR4, HON5, AT4G17040) (HIGH MOBILITY GROUP FAMILY A 5) is chloroplast phosphoprotein Arabidopsis thaliana
moderate transcriptional response in Hakea prostrata shows this species has not entirely lost capacity to regulate phosphorus (P) use for lipid metabolism through changes in gene expression Hakea prostrata
208 genes in positive edges include 194 (93%) genes with conserved down-regulation Oryza sativa
α-zeins may be repressed through unknown feedback mechanism resulting from reduced γ-zein synthesis Zea mays
MeJA-responsive element (CGTCA motif) was identified in (MIR319, MIR319B, AT5G41663) promoter Oryza sativa
expression pattern of Class I KNOX genes determines function of Class I KNOX genes Arabidopsis thaliana
redox has emerging regulatory roles in transcription
methylation of histone H3 lysine 4 (H3K4) correlates with transcriptional stimulation
fine tuning of gene expression is achieved by sophisticated mechanisms
nuclear roles of npcRNAs can have consequences on generation of novel patterns of gene expression
NblA expression is adjusted by response regulator NblR cyanobacteria
MYB transcription factors are overrepresented with 14 genes out of 43 Petunia axillaris; Petunia exserta; Petunia parodii
DNA methylation can result in changes at biochemical, genetic and epigenetic levels
decrease in H3K27me3 levels at (MIR156A, AT2G25095) /C loci leads to upregulation of gene expression at (MIR156A, AT2G25095) /C loci Arabidopsis thaliana
histone (H2B, HTB2, AT5G22880) monoubiquitination (H2Bub) is positive regulator of gene expression of protein tyrosine phosphatases Arabidopsis thaliana
absence of orthologs in Hakea prostrata transcriptome database for many lipid genes that are induced by myeloblastosis transcription factor PHOSPHATE STARVATION RESPONSE1 (AtPHR1, PHR1, AT4G28610) in response to phosphorus (P) limitation in Arabidopsis Hakea prostrata; Arabidopsis thaliana
cis-regulatory motifs are located in gene promoter regions Arabidopsis thaliana
MdERF3 binds to its promoter Malus domestica
reduction of YHB protein abundance could be responsible for global suppression of YHB transcriptome
(ARF16, AT4G30080) is predicted to repress transcription
(AOX1A, ATAOX1A, AtHSR3, HSR3, AT3G22370) and (NDB2, AT4G05020) have similar CAREs in promoters Arabidopsis thaliana
QdMYB QD01G020890 and QdNAC QD08G038820 identified as important upstream regulators Quercus dentata
Cnr mutation is epigenetic change
(CCR2, CRTISO, AT1G06820) promoter shows atypical reporter gene expression potentially due to chromosomal position effects Arabidopsis thaliana
histone lysine methylation plays important role in reprogramming of gene expression
ccc mutant shows no change in expression of (ATCAD4, CAD, CAD-C, CAD4, AT3G19450) G gene Arabidopsis thaliana
photosynthetically active light without photosynthetic inhibitors allows testing role of plastoquinone (PQ) pool in state transitions, gene regulation and acclimation reactions
hindrance of demethylation during ripening may affect acs2-2 transcript levels Solanum lycopersicum
deletion of the psbA2 gene copy is fully compensated by expression of the psbA3 gene Synechocystis
3,701 shared edges connect 381 genes Oryza sativa
changes in expression levels of other four MdBT genes possibly due to functional redundancy and mutual regulation among the MdBT genes
in trans regulation is important in higher eukaryotes
genes enriched for H3K27me3 frequently exhibit tissue-specific expression Arabidopsis thaliana
epigenetic mechanisms may be basis of response hysteresis
suppression of LHPI, (CMT3, AT1G69770) (ATHD1, ATHDA19, HD1, HDA1, HDA19, HDAC19, RPD3A, AT4G38130) and (ATSUVH2, SDG3, SUVH2, AT2G33290) in CCT431 may have indirect effects through deregulation of other factors controlled by these epi-regulators Arabidopsis thaliana
down-regulation in the transcript level of the flv4-2 operon occurred when dysfunctional PBs were present Synechocystis
regulatory elements function in combination to increase specificity
coordinated induction of photosynthetic gene expression in (AQC1, HPS7, TPST, AT1G08030) suggests suppression of negative regulators for photosynthetic genes Arabidopsis thaliana
(PRK, AT1G32060) is differentially regulated in Vaucheria litorea and Elysia chlorotica Vaucheria litorea; Elysia chlorotica
folate levels impact expression of other genes Solanum lycopersicum
chimeric promoter could change SST expression
activity of ABC transporters might not be regulated at transcriptional level
riboswitches control gene expression
Type I and II genes regulation is primarily post-transcriptional
histone deacetylase (ATHDA6, AXE1, HDA6, HDAC6, RPD3B, RTS1, SIL1, AT5G63110) could represent one of those trans-acting determinants
(ABI3, AtABI3, SIS10, AT3G24650) proteins lacking the B3 domain can regulate gene expression
AS2–AS1 complex and putative epigenetic factors control expression of (ARF3, ETT, AT2G33860) Arabidopsis thaliana
expression of OsFd1 and OsFdC2 are not compensated in rice Oryza sativa
(CCR2, CRTISO, AT1G06820) promoter shows atypical reporter gene expression with greater variability compared to cauliflower mosaic virus 35S promoter (CaMV35S) Arabidopsis thaliana
extensive gene silencing of PAL genes in Solanaceae precise genetic mechanisms remain to be established genetic mechanisms of gene silencing Lycopersicon esculentum
ARABIDOPSIS THALIANA (BGT, GCN5, HAC3, HAG01, HAG1, HAT1, AT3G54610) (AtGCN5) associates with large number of promoters Arabidopsis thaliana
GmCCA1a expression levels were more effectively repressed in YFP-H4 callus than in YFP-H6 callus Glycine max
TCP genes encode transcription factors regulating various target genes Arabidopsis thaliana
promoter activity of CK2B1 from swollen stem type was significantly higher than promoter activity of CK2B1 from non-swollen stem types Brassica juncea
OMTN1, OMTN2, OMTN3, OMTN4 and OMTN6 may have different roles in OsmiR164 regulatory network Oryza sativa
RNA trafficking has implications in systemic regulation of gene expression
male-transmitted miRNAs could mediate regulation of transcripts in seed Arabidopsis thaliana
(CCR2, CRTISO, AT1G06820) promoter shows atypical reporter gene expression with greater variability compared to εLCY promoter Arabidopsis thaliana
increased SST expression might be caused by differential expression of trans-acting factors in Pna-10 and Pna-17 backgrounds
PHYTOCHROME INTERACTING FACTOR 3 (PAP3, PIF3, POC1, AT1G09530) plays central role in gene regulatory network
FAD-binding polyamine oxidase (PAO) genes are predicted to be regulated by biotic signals Arabidopsis thaliana
regulation of differentially expressed genes is essential for understanding developmental processes and environmental stimulations in living organisms
increased BrLhcb1 expression in (ARK3, AtKINUa, PAK, AT1G12430) choi hybrids is caused by upregulation of BrCCA1 Brassica rapa subsp. chinensis
BrCCA1 (CIRCADIAN CLOCK ASSOCIATED 1) can directly activate BrLhcb1 transcription Brassica rapa subsp. chinensis
environmentally dependent phenotypic variation must involve regulation of transcription factors that switch designated gene networks on and off
double CCR/ (ATCAD4, CAD, CAD-C, CAD4, AT3G19450) down-regulated tobacco plants show large modifications of gene expression Nicotiana tabacum
GmPRR3b H6 is less effective than GmPRR3b H4 in repressing GmCCA1a transcription Glycine max
GSL metabolites may influence gene expression
BrCCA1-silenced (ARK3, AtKINUa, PAK, AT1G12430) choi show lower BrLhcb1 transcription Brassica rapa subsp. chinensis
nuclear body in which regulators are concentrated could contribute to regulation via spatial positioning
functional interaction between histone methyltransferases, demethylases, and AtGCN5 is important for understanding genome function Arabidopsis thaliana
alpha-gliadin genes may have different promoter regions Triticum aestivum
acs2-2 promoter harbours two mutations in promoter Solanum lycopersicum
AtGCN5 may nucleate histone deacetylation on core promoters Arabidopsis thaliana
(ATPAL1, PAL1, AT2G37040) (ATPAL2, PAL2, AT3G53260) mutant shows normal size despite dramatic perturbation of gene expression Arabidopsis thaliana
members of the canonical LAFL network has been speculated to perform reactivation of seed maturation genes in desiccating leaves
genic coexpression network analyses may derive insights into physiological responses of diploid versus polyploid cotton Gossypium
unexpectedly high number of flg22-downregulated genes may include many indirect targets
NblA expression is adjusted by sensor NblS cyanobacteria
(AtLHP1, LHP1, TFL2, AT5G17690) background detected increased levels of SEEDKEEPING (AGL11, STK, AT4G09960) Arabidopsis thaliana
transcription factors direct expression reprogramming of gene expression
specific localization of genes may affect processes other than transcription
genes interact with other genes
H6-YFP overexpression callus showed significantly downregulated GmCCA1a expression Glycine max
high-throughput profiling and transcriptional network inference methods reveal functional interactions across genes
OsmiR164 temporally and spatially regulated OsNAM expression pattern Oryza sativa
non-presence/absence (non-PAV) single-parent expression (SPE) genes are under trans regulation Zea mays
primary and secondary signals involve changes in global gene expression
gene regulatory networks (GRNs) can represent spatial regulations
histone modifications and chromatin accessibility and transcription are steps in environmental regulation of gene activity
transcriptional and cis-regulatory state analysis crucial to link cis-regulatory mechanisms
expression patterns of StSP6A and StCEN closely match each other Solanum tuberosum
(EEP1, MIR164, MIR164C, AT5G27807) restricts (ANAC098, ATCUC2, CUC2, AT5G53950) expression Arabidopsis thaliana
regulatory elements support organ-specific and development-specific functions Arabidopsis thaliana
transcript abundance of Fe-deficiency-induced genes is positively correlated with 24-nucleotide siRNAs Oryza sativa
miR171 expression can be regulated by several different genes and environmental factors
FAD-binding polyamine oxidase (PAO) genes are predicted to be regulated by abiotic signals Arabidopsis thaliana
jaw-D mutants have (JAW, MIR319, MIR319A, AT4G23713) gene ectopically activated by enhancer cassette promoter Arabidopsis thaliana
FSH or a FSH-derived molecule may act as transcription factors
differences in enzyme activities during the developmental stages emphasize CaMV 35S promoter is constitutive but is regulated developmentally
miR171 was found to target transcription factors involved in regulation of gene expression and signal transduction
HSFs function in differential regulation of HSP genes under various environmental stresses and developmental stages
lack of change in rubisco expression may be due to high background expression of the rubisco small subunit or rubisco activity is regulated at the protein level rather than at the transcription level
regulatory npcRNAs have been discovered and characterized regulatory function
TE-siR815 represses (AtSOT1, AtSOT12, ATST1, AtSULT202A1, RAR047, SOT12, ST, ST1, SULT202A1, AT2G03760) expression Oryza sativa
global analyses of patterns of gene expression downstream of (AS2, AT1G65620) and (AtMORC4, MORC4, AT5G50780) (AtMORC7, MORC7, AT4G24970) showed that (AS2, AT1G65620) and (AtMORC4, MORC4, AT5G50780) (AtMORC7, MORC7, AT4G24970) regulate different sets of genes Arabidopsis thaliana
increased BrLhcb1 expression in (ARK3, AtKINUa, PAK, AT1G12430) choi hybrids is not caused by DNA methylation Brassica rapa subsp. chinensis
InLYP1 promoter contains cis-elements involved in light or drought response Arabidopsis thaliana
methylation of histone H3 lysine 27 (H3K27) associates with gene silencing
expression profiling of OtsA- and OtsB-expressing Arabidopsis seedlings demonstrated TREHALOSE-6-PHOSPHATE (T6P) levels inversely correlate with (AKIN10, KIN10, SnRK1, SnRK1α1, SNRK1.1, AT3G01090) /11-controlled gene expression Arabidopsis thaliana
Arabidopsis lines down-regulated for C3'H display massive changes in gene expression Arabidopsis thaliana
mutations in class I and class II BPCs increased (ABI4, ATABI4, GIN6, ISI3, SAN5, SIS5, SUN6, AT2G40220) expression in roots Arabidopsis thaliana
upregulation of AGAMOUS (AG) in (AtLHP1, LHP1, TFL2, AT5G17690) (ATBPC4, BBR, BPC4, AT2G21240) (ATBPC6, BBR/BPC6, BPC6, AT5G42520) triple mutant confirms LHP1–class II BPC interplay in seedlings Arabidopsis thaliana
(ATHD1, ATHDA19, HD1, HDA1, HDA19, HDAC19, RPD3A, AT4G38130) mutants show increased acetylation on core and upstream promoter regions Arabidopsis thaliana
long npcRNAs modulate cellular RNP networks
AMPK regulation includes direct activation of transcriptional machinery Mammalia
gene regulatory network consists of circadian rhythm-related genes, phytochrome-mediated light signaling-related genes, and stress-tolerance-related genes
cotton fiber development networks demonstrated utility of genic coexpression network analyses Gossypium
ccc mutant shows down-regulation of (ALDH1A, ALDH2C4, REF1, AT3G24503) gene Arabidopsis thaliana
new gene clusters changing and modifying the existing gene transcriptional network
cold acclimation (CA) is multigenetically regulated process
RNA silencing is conserved mechanism for gene regulation
combination of bpc alleles showed pleiotropic phenotypes Arabidopsis thaliana
HAM expression patterning is conserved in meristems
RNA silencing is pan-eukaryotic, sequence-specific gene regulation mechanism
TAL effectors can be used for targeted gene regulation
timing of regulatory events at different levels is critical aspect of gene regulation
heritable stress effects on TS–GUS are mediated by one or more trans-acting factors
(MIR171C, AT1G62035) targets SCL6 genes
histone acetylation has been linked to transcriptional control
ABA regulates transcriptional gene regulation
some non-protein-coding RNAs have sequence complementary to (AHG1, AT5G51760) Arabidopsis thaliana
non-coding RNAs may have many species-specific regulatory functions
genes that co-expressed in the same tissues at the same developmental stages may be differentially regulated
2,825 protein-coding genes may be linked to differentially expressed lncRNAs Solanum lycopersicum
expression of OsFd1 and OsFdC2 are coordinated in rice Oryza sativa
expression profiles of these genes compared using TomExpress, we found a strong Pearson correlation (about 0.9) between them, indicating that these genes display very similar transcriptional regulation
DNA methylation within the gene body at CG, CHG and CHH contexts were more robust predictors for gene expression compared with promoter and downstream methylation Solanum lycopersicum
methylation levels within genes were not correlated with gene expression levels in all genes Zea mays
TE-induced mutations include changes in gene regulation by inactivating enhancers or repressors upon insertion
RNA modifications constitute essential layer of gene regulation
within and pan-species comparisons illuminate deeply conserved circuitry
uORFs is variation in RNA sequence determinants
gene activity can be heavily controlled by circadian clock
transcription factors are investigated via genomic, bioinformatic, and proteomic approaches
HISTONE DEACETYLASE 9 (AtHDA9, AtHDAC9, HDA09, HDA9, HDAC9, AT3G44680) contributes to repression of many genes
mechanisms that assess cell size inform gene expression
male-derived (MIR159, MIR159A, AT1G73687) acts transgenerationally targeting transcription factors (ATMYB33, MYB33, AT5G06100) /65 Arabidopsis thaliana
(COB, ATMG00220) family members are present in primary, secondary, and (CESA09, CESA9, AT2G21770) regulons Arabidopsis thaliana
gene compartmentalization may regulate transcription
AMPK regulation includes stimulation of activators Mammalia
histone methylation has been linked to transcriptional control
competing computational approaches highlight complex nature of gene regulation
other regulatory factors instead of promoter may cause specific expression of CpMYB1 Chimonanthus praecox
analysis detected slight enrichment in chromatin marks associated with active transcription at MITE copies positively correlated with copy number increase Oryza sativa
epigenetic marks have strong influence on expression of the genome
meristematic cells activate and maintain gene expression programs
gene co-expression networks is explored to uncover gene regulatory relationships
microRNAs (miRNAs) play pivotal roles in regulating gene expression
candidate functional SNPs may be from DNA-RNA binding sites
osmtd2-2 mutant anthers show upregulation of genes involved in transcriptional modification Oryza sativa
(ACG1, ATMSI4, FVE, MSI4, NFC04, NFC4, AT2G19520) has RdDM-independent role
non-coding RNA (ncRNA) can have regulatory effects through direct effects on transcription
AtNF-YA5 gene partially overlaps with neighbor gene in reverse orientation Arabidopsis thaliana
inverted repeats trigger methylation of PAI genes Arabidopsis thaliana
microRNAs (miRNAs) is regulatory small RNA class
ccc mutant shows overexpression of (CAD1, PROSCOOP5, AT5G44570) gene Arabidopsis thaliana
chimeric phS:yfp gene is terminated by endogenous Volvox carteri phS terminator region Volvox carteri
unintended changes could be materialized because of position effect
frameshift mutation of CpMYB1 may lead to loss of regulatory function of CpMYB1 Chimonanthus praecox
PAV genes between (B73, CHL6, CNX, CNX1, SIR4, AT5G20990) and Mo17 are controlled by trans-eQTL Zea mays
MITE insertions in promoters repress transcription
histone methylation does not directly lead to transcriptional activation or repression
UPE-box is present in UP9C promoter Nicotiana tabacum
AtEIL4 and AtEIL5 have not been identified characterized functions Arabidopsis thaliana
TGACG motif is found in SCP1 promoter Oryza sativa
(MIR159, MIR159A, AT1G73687) has P-box motif in promoter region of 1000 bp upstream promoter region
unknown cis-acting element(s) may be necessary for specific responsiveness to AZC Oryza sativa
AZRE was indispensable for HS activation of Oshsp17.3 and Oshsp18.0 Oryza sativa
(GAUT13, AT3G01040) or (GAUT14, AT5G15470) may be partially rescued by existing (GAUT12, IRX8, LGT6, AT5G54690) expression
(PRL1, SCPR44, AT4G15900) mutation results in changes in gene expression Arabidopsis thaliana
chromatin-remodeling factors may be directly or indirectly involved in activation or repression of target genes Arabidopsis thaliana
nucleolar association of genes opens the way for spatial positioning via nucleolar positioning
FLOWERING SEED 3 (FUS3, AT3G26790) has been characterized as BPC target Arabidopsis thaliana
drastic decrease of cell wall Rha might result from altered transcriptional activity
transcription factors play prominent roles in regulating expression of genes
comprehensive understanding of gene regulation mechanisms requires more work to build gene regulation
structural variants have been suggested to be associated with gene regulatory variation in maize Zea mays
small RNAs function as negative regulators of gene expression
TAL effectors enable control over gene function and expression
trait-associated SNPs in maize nested association mapping (NAM) population approximately half located in upstream promoter regions of genes Zea mays
small, non-coding RNAs (sRNAs) participate in genetic networks
microRNAs (miRNAs) participate in regulatory networks
technological advances have expanded understanding of roles transposons play in gene regulation
TE insertions may have minor effect on transcription
circular RNAs (circRNAs) represent epigenetic regulation
(ABI5, AtABI5, DPBF1, GIA1, AT2G36270) negatively regulates expression of (ATFD1, FD1, AT1G10960)
regulation of (ABI5, AtABI5, DPBF1, GIA1, AT2G36270) is complicated network that occurs at diverse layers
PpERF105 modulates expression of transcription factor genes Pyrus pyrifolia
ame tool found the highest number of motifs in C BS and C BS&M (n = 44 and 91, respectively) Oryza sativa
transcriptional regulation involves transposable elements
small RNAs negatively regulate gene expression
regular host genes (RHGs) have nearly unlimited access to novel regulatory cassettes
TE regulation of genes may be more prevalent in rice Oryza sativa
transposable element (TE) insertions have regulatory effect on adjacent genes
DNA methylation could enhance transcription by promoting the binding of transcription activators
transcription factors will likely reveal genetic and epigenetic regulation of the P450 gene
MITE insertions repress translation
recent MITE insertions tightly linked to genes may be involved in differences of gene expression among varieties Oryza sativa
genetic and molecular analyses in Arabidopsis thaliana shed light on regulatory networks in plants Arabidopsis thaliana
small RNAs (sRNAs) includes micro RNAs (miRNAs)
artificial eccDNA can express small regulatory RNAs
Trans-regulation of memory genes implicates mechanisms such as non-coding RNAs
second allele associated with Ps-DACS3b was found only in late SH genotype Prunus spp.
high cysteine proteinase activities in OCE leaves indicates the presence of feedback modulation of cysteine proteinase expression Nicotiana tabacum
T/G-box element (AACGTG) is present at -226 to -221 Gossypium arboreum
proximal RY elements comprise ABA response elements (ABREs) Arabidopsis thaliana
upstream regions of (ATCYTC-A, CYTC-1, AT1G22840) and (CYTC-2, AT4G10040) genes produce partially different expression patterns Arabidopsis thaliana
increase in transcript levels of MtPIM triggers strong repression of MtFULc Medicago truncatula
non-PAV SPE genes are predominantly under cis regulation Zea mays
analyses of conserved non-coding regions identified putative cis-regulatory sequences
small RNAs regulate gene expression
cell functionality can be compared with gene expression
histone methylation elevates or lowers transcriptional competence of genes
biogenic signaling acts through chromatin remodeling
bromodomain-acetylated histone interaction may be required for basal transcription Arabidopsis thaliana
microRNAs (miRNAs) are post-transcriptional negative regulators
ABA regulates post-transcriptional gene regulation
(ATRALF1, RALF1, RALFL1, AT1G02900) promoter contains RH-specific cis-element (RHE) Arabidopsis thaliana
abscisic acid impacts abundance of gene transcripts
GmNF-YC4 might be able to bind directly to promoter region of asparagine synthetase-related genes Glycine max
coding regions of ZmMYB138 and ZmMYB115 were amplified with Zma-miR159k-3p binding sites Zea mays
small interfering RNAs (siRNAs) mediate gene expression
integration of different data types reveals detailed knowledge of gene regulatory networks
Trans-regulation of memory genes implicates mechanisms such as long-range interactions between (ATNACK2, NACK2, TES, AT3G43210) and memory genes
methylation levels within genes negatively correlates with transcript abundance of starch synthesis genes Zea mays
PAV genes between (B73, CHL6, CNX, CNX1, SIR4, AT5G20990) and Mo17 are controlled by cis-eQTL Zea mays
some MITE insertions may modify gene expression Oryza sativa
fimo tool identified the most enriched motifs in C V and C BS&M (n = 86 and 100, respectively) Oryza sativa
paramutations involve trans-homolog interactions
small RNAs play important roles in biological processes
epigenetic modifications reprogram gene expression networks
modification of epigenetic marks and distal regulatory regions regulates gene expression
important signal molecules modify gene expression
ethylene perception was not required for superinduction of PhPT1 by CHX
another JA-independent signal is also needed for NaF6ʹH1 activation Nicotiana attenuata
large haplotype-specific structural variants have potential to affect allele-specific expression Manihot esculenta
(SUVH1, AT5G04940) binding enhanced proximal gene transcription Arabidopsis thaliana
(DDP1, PTM, AT5G35210) in the nucleus was suggested to activate ABA INSENSITIVE 4 (ABI4, ATABI4, GIN6, ISI3, SAN5, SIS5, SUN6, AT2G40220)
vein-specific transcription factors included families such as (AtbZIP, bZIP, AT1G68880) (bHLH, AT5G51780) G2-like, MYB-related and Dof Oryza sativa
japonica background more readily facilitates Xa3/Xa26 expression Oryza sativa
cis-regulatory element presence and accessibility is specific regulatory feature
β-cyclocitral (β-CC) is able to regulate gene expression
phylostratigraphy is explored to uncover gene regulatory relationships
changes in chromatin accessibility can influence activation or repression of specific genes
H3K4me2 is implicated with activation and possibly repression Arabidopsis thaliana; Oryza sativa
microRNAs are endogenously produced 21-nt riboregulators
gene regulatory networks (GRNs) are used to visualize causal regulatory relationships between regulators and their downstream target genes
complex interplay at overlapping RNAPII/III-transcribed genes exists in Arabidopsis thaliana Arabidopsis thaliana
PIP (plant-inducible promoter) box is upstream of protease genes Xanthomonas
distant eQTLs tend to form hotspots in the genome, controlling genes significantly enriched in specific functional categories and being trans-regulators for a variety of metabolic pathways Zea mays
altering the abundance of SlSCL3 protein may lead to different stable state with increased activation of genes downstream of SlSCL3 Solanum lycopersicum
19.61% of analyzed genes were associated with trans-only regulation Oryza minuta
H3K27me2 in mouse plays protective role in preventing the activation of non-cell-type-specific enhancer elements Mus musculus
high PpMYB140 expression level after 1-MCP treatment might be regulated by other transcription factors Pyrus pyrifolia
transcriptional activation of transcription factors was not triggered by demethylation Zea mays
amplification loop control gene expression
transcription factors and chromatin remodeling elements identified in plasticity-linked genes and plasticity-specific candidate genes Medicago truncatula
deep learning models can predict transcription factor binding
HISTONE DEACETYLASE 9 (AtHDA9, AtHDAC9, HDA09, HDA9, HDAC9, AT3G44680) can function in transcriptional activation
gene expression is transcriptionally regulated by cis-acting regulatory elements
regulation of (ABI5, AtABI5, DPBF1, GIA1, AT2G36270) includes transcription, epigenetic regulation and post-translational modifications
16.67% of analyzed genes were associated with cis-only regulation Oryza minuta
genome sequences enable understanding of gene regulatory landscapes in plants
mobile RNAs function as gene regulatory molecules
increased SST expression may be due to chimeric promoter itself
expression of a large number of genes appears unaffected by nuclear positioning