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protein structure

31644 relationships annotated with this phrase. Showing first 500 of 31644.
Source entity Relationship Target entity Species
nucleic acid-binding domain (NBD) is formed together with conserved THR 159 and ARG 169 Synechococcus 7942
C06 protein had compositional bias for alanine and glutamine Albugo candida
SDE2-C contains SAP (SAF-A/B, (ACINUS, AT4G39680) PIAS) domain Arabidopsis thaliana
three residues (Lys-193, Arg-200, and Arg-215) reside within transmembrane helix (TMα5) or short loop preceding it Arabidopsis thaliana
WY-domains is common fold found only in RXLR family of proteins Plasmopara viticola
3D FT and FEH protein structures contained β-propeller domain, β-sheet domain, and unstructured tail
plant (TGS1, AT1G45231) proteins have unusual intragenic duplication of the SAM domain
cysteine residues in NCR peptides is common feature of NCRs Medicago truncatula
extended intrinsically disordered loop in C7-Raf subfamily is uniquely extended to 21–26 residues Arabidopsis thaliana
nonclassical HRGPs have complicated domain structures
NCR peptides possess four or six cysteine residues in conserved positions Medicago truncatula
primary interaction in the second conformational state is with Arg43 Chlorella ohadii
AhMYB2.1 had slightly altered version of bHLH-interaction motif Amaranthus hypochondriacus
(XXT3, AT5G07720) (XXT4, AT1G18690) and (XXT5, AT1G74380) have same Gly instead of Ile residue at the same position Arabidopsis thaliana
Arabidopsis bri1-5 mutant is due to C69Y amino acid substitution in extracellular domain of (ATBRI1, BIN1, BRI1, CBB2, DWF2, AT4G39400) Arabidopsis thaliana
PIN proteins contains hydrophilic loop Physcomitrella patens
conformational change in the binding pocket is in accordance with high-affinity FtsZ conformation and low-affinity FtsZ conformation Synechococcus 7942
carotene globule protein (CGP) is Pro-rich protein Dunaliella bardawil
U-box domain of MpPUB9 contains all six amino acids which were universally conserved residues of the U-box domain sequence Marchantia polymorpha
carotene globule protein (CGP) is more hydrophilic than major lipid droplet protein (MLDP) Dunaliella bardawil
canonical PIN proteins share four highly conserved motifs in hydrophilic loop
in-frame insertion altering seven amino acids is within predicted transmembrane domain Marchantia polymorpha
MdLRP14 lacks signaling peptides, transmembrane structures, or other functional domains Malus domestica
MdLRP14 does not possess N-terminal structural domain, such as (AtTN10, TIR, TN10, AT1G72930) (Toll-interleukin-1 receptor) or CC (coiled-coil) Malus domestica
Slr1064 lacks transmembrane domains Synechocystis
CfCE54 protein contains cysteine-rich region with eight cysteine residues Fulvia fulva
superimposition of HB1s from PSR2 and g164 LW modules showed good overlap Plasmopara viticola; Phytophthora sojae
Hybrid HRGPs contain two different HRGP domains
A1ATs consist of bait and swinging arm
Arg-185 in PPCKA is found opposite region 160 to 165 Flaveria
small heat shock proteins (sHSPs) are family of proteins ranging in size from 15 to 45 kD
archaea HSP16.5 from Methanococcus jannaschii revealed large oligomers and architectural basis for molecular chaperone activity Methanococcus jannaschii
specific mutations disrupting interaction of individual helices or combinations thereof with rest of CC were introduced to disrupt interaction of individual helices with rest of CC Solanum tuberosum
NIP I, NIP II, and NIP III pore families possess conserved signature sequences and structures within the ar/R selectivity filter
BRCT3 domain is located at C terminus of DDRM2 Arabidopsis thaliana
X residues in PX1PX2 motif are highly hydrophilic amino acids Oryza sativa
POX domain predicted the helical structure mediated by two key residues, Phe-227 and Phe-251
C14 and C15 proteins had bias toward increased serine Albugo candida
carotene globule protein (CGP) is mostly unstructured protein Dunaliella bardawil
effectors have structure similar to proteins with RNA-binding activity Blumeria graminis
(ATCPK32, CDPK32, CPK32, AT3G57530) divided into three fragments according to functional domains: N, K, and JC Arabidopsis thaliana
C7 Raf-like kinases have extended intrinsically disordered loop between the β4 and β5 sheets in the N-lobe Arabidopsis thaliana
potassium channels are tetramers
(ATXT1, AtXXT1, XT1, XXT1, AT3G62720) (ATXT2, AtXXT2, TXT2, XT2, XXT2, AT4G02500) and (XXT5, AT1G74380) structures showed high similarity of residues in their active sites Arabidopsis thaliana
candidate effector proteins lack RXLR motif Plasmopara viticola
g164 predicted structure was divided into modules containing HB1-like sequence at C-terminal part Plasmopara viticola
(ALMT9, AtALMT9, AT3G18440) functioning as a multimeric complex would mean that heteromultimeric hybrids of AtALMT9 WT and AtALMT9 K193E would exhibit altered sensitivity to citrate Arabidopsis thaliana
SNF2 proteins are characterized by containing DEXDc and HelicC subdomains
Several α-helices form selective 'pore' in the membrane
(ATXT1, AtXXT1, XT1, XXT1, AT3G62720) (ATXT2, AtXXT2, TXT2, XT2, XXT2, AT4G02500) and (XXT5, AT1G74380) structures showed one critical difference Arabidopsis thaliana
G352 residue in (XXT5, AT1G74380) forms open cleft Arabidopsis thaliana
Sep63 in the second conformational state simultaneously establishes strong and specific donor–acceptor interactions with amino acids in Fd, such as Arg43, Glu32, and Tyr40 Chlorella ohadii
LIKE HETEROCHROMATIN PROTEIN 1 (AtLHP1, LHP1, TFL2, AT5G17690) contains plant unique motifs I/II Arabidopsis thaliana
(ALMT9, AtALMT9, AT3G18440) is predicted to consist of transmembrane domain at the N terminus and a soluble C-terminal domain Arabidopsis thaliana
all known GPI-anchoring proteins lack internal transmembrane helices
superimposition of PSR2 LWY motifs and g164 LWY modules revealed overlap at PSR2 LWY (AHB1, ARATH GLB1, ATGLB1, GLB1, HB1, NSHB1, Pgb1, AT2G16060) but different structural organization for (AHB2, ARATH GLB2, ATGLB2, GLB2, HB2, NSHB2, PGB2, AT3G10520) Plasmopara viticola; Phytophthora sojae
MpPUB9 contains U-box domain at the N-terminus Marchantia polymorpha
BRCT1 domain is located at N terminus of DDRM2 Arabidopsis thaliana
g164 protein consists of nine modular repeats, most containing five alpha-helices Plasmopara viticola
structural analysis of peptides NCR044 and NCR169 confirmed presence of different pattern of disulphide bonds Medicago truncatula
C15 protein intrinsically disordered regions (IDRs) were slightly shorter in extension at the N-terminus (maximum stretch of 23 amino acids, vs 129 for C06 and 30 for C14) C06 and C14 intrinsically disordered regions (IDRs) Albugo candida
IDRs may facilitate prevention of globular conformation that restricts access of proteases Albugo candida
additional residues in AhMYB2.2 disrupt conserved R3 domain and bHLH-interaction motif Amaranthus hypochondriacus
candidate effector proteins carry WY-domains Plasmopara viticola
avirulence proteins in (BGT, GCN5, HAC3, HAG01, HAG1, HAT1, AT3G54610) have RNase-like fold Blumeria graminis
(AtEMF2, CYR1, EMF2, VEF2, AT5G51230) contains VEFS (VRN2-EMF2-FIS2-Su(z)12) domain Arabidopsis thaliana
proteins from g164, g165 and g166 did not contain RXLR or RXLR-like motifs in N-terminal region Plasmopara viticola
g164 structural modules produced good overlap at N terminus but different at C terminus Plasmopara viticola
MpPUB9 consists of 420 amino acids Marchantia polymorpha
AtTGS1-LIKE has unusual intragenic duplication of the SAM domain Arabidopsis thaliana
ZmTUB3 contains conserved EEY motif at C terminus Zea mays
In the second conformational state, Sep63 retains its ability to interact with Arg41 in the PsaE protein Chlorella ohadii
g164 predicted structure appeared modular Plasmopara viticola
four charged residues Lys-87, Lys-139, Glu-196, and Arg-215 are located in cytosolic loops next to transmembrane α-helix 1, transmembrane α-helix 2, and transmembrane α-helix 5 and at the vacuolar-facing moiety of transmembrane α-helix 5 Arabidopsis thaliana
RePRPs contain multiple copies of unique repetitive motif PX1PX2 Oryza sativa
predicted OsNF-YA4-IR1 protein only appears to carry the Q, S/T-rich domain Oryza sativa
GLY 47 and GLY 48 are located within conserved GG*N (47–51) nucleic acid-binding domain (NBD) Synechococcus 7942
BRCT4 domain is located at C terminus of DDRM2 Arabidopsis thaliana
AhCQ2G6Y has typical conserved CC domain Arachis hypogaea
CfCE54 protein contains repeat-rich region with four direct imperfect 11-amino acid repeats Fulvia fulva
protein sequences of AhMYB2 isoforms AhMYB2.1 and AhMYB2.2 differed by four additional residues in AhMYB2.2 Amaranthus hypochondriacus
g164 LW modules 2-9 revealed good structural overlap Plasmopara viticola
RePRPs are unlikely to form membrane-spanning α-helices Oryza sativa
nine modular repeats of g164 are tentatively named LW modules Plasmopara viticola
(BAM4, BMY6, AT5G55700) lacks conserved residues important for catalysis Arabidopsis thaliana
MLDs reside at extracellular domain of Receptor-like kinases (RLKs) in plants
OsARC contains heterogeneous GST_C domain Oryza sativa
(NIP7;1, NLM6, NLM8, AT3G06100) lacks phosphorylation motif
Arabidopsis FAE1-KCSs and yeast ELO proteins have similar functions but are structurally dissimilar
chloroplast (CP12, CP12-2, AT3G62410) contains intramolecular disulfides
Barley (ATLTP1, AtLtpI-4, LP1, LTP1, AT2G38540) has eight cysteines Hordeum vulgare
Mp (AGR, AGR1, ATPIN2, EIR1, MM31, PIN2, WAV6, AT5G57090) 3 4 5 possess short central hydrophilic loop Marchantia polymorpha
AhALKBH15 has alanine-rich region Arachis hypogaea
AhALKBH15 has unique coiled helix structure at the N-terminus Arachis hypogaea
MdLRP14 consists exclusively of LRR structural domains Malus domestica
protein conformation is more likely to be modified at around His-495 in the A′α helix Solanum lycopersicum
(ATBAK1, ATSERK3, BAK1, ELG, RKS10, SERK3, AT4G33430) contains YXXĖ motif in cytoplasmic tail Arabidopsis thaliana
third α-helix of NDPS1 and zFPS is considerably shorter than third α-helix in E. coli undecaprenyl pyrophosphate synthase Solanum habrochaites; Escherichia coli
SlCPT2, SlCPT6, and SlCPT7 lack complete third α-helix Solanum lycopersicum
relative positions of aromatic amino acids corresponding to Tyr-100 in NDPS1 and Phe-107 in zFPS differ substantially between NDPS1 and zFPS Solanum habrochaites
OsERS1 protein contains N-terminal GST_C domain Oryza sativa
CC-NLR is composed of CC domain, NB-ARC domain, and LRR domain
rice RePRP proteins have distinct Pro-repeat pattern Oryza sativa
sHSP22, HSP26p, HSPB4, HSPB1, and HSPB3 share conserved α-crystallin domain composed of 2 hydrophilic subdomains Arabidopsis thaliana
α-amylase/trypsin inhibitor family contain five disulfides Hordeum vulgare
major lipid droplet protein (MLDP) is highly structured protein Dunaliella bardawil
helices of GhPMEI3 are positioned perpendicularly to β-helix in GhPME2 and GhPME31 Gossypium hirsutum
NIP II and NIP III channels have wider ar/R regions than NIP I proteins
Arg-495-to-His substitution is located in highly conserved A′α helix in the Hinge1 region located between the conserved (ANAC034, ANAC035, AtLOV1, LOV1, NAC035, AT2G02450) and LOV2 domains Solanum lycopersicum
incomplete α-helix in NDPS1, SlCPT2, SlCPT6, and SlCPT7 is the result of shorter intervening sequence downstream of (ACPT, AtcPT3, CPT, cPT3, AT2G23410) conserved domain III Solanum habrochaites; Solanum lycopersicum
other SS isoforms have distinct predicted coiled-coil motifs of their own
CC domain of Rx1 has relatively simple structure Solanum tuberosum
OsFDML1, OsFDML2, OsFDML3, and OsFDML4 contain conserved domains of XS and XH Oryza sativa
well-characterized (AHG2, ATPARN, PARN, AT1G55870) proteins contain three conserved domains
thioredoxin molecules may possess three-dimensional structure
(PMZ, SAP12, AT3G28210) contains 16 cysteines
divergent amino acids between NDPS1 and zFPS are located within (ACPT, AtcPT3, CPT, cPT3, AT2G23410) conserved domains II and III Solanum habrochaites
CsUGT74AD1 lacks hydrophobic domain Crocus sativus
C1 MAP3Ks are characterized by presence of N-terminal ankyrin repeat domain
SWR1 subfamily is characterized by presence of an unusual insertion that splits the ATPase domain
truncated GDSL lipases lack C-terminal region Solanum lycopersicum
StCLV2 contains 16-amino acid cytoplasmic tail Solanum tuberosum
BRUTUS (BTS, EMB2454, AT3G18290) encodes CHY zinc-finger domain Arabidopsis thaliana
divergent amino acids between NDPS1 and zFPS lie within or adjacent to second or third α-helix Solanum habrochaites
type II (PMES, AT4G10050) do not contain the proregion
group 2 pectin methylesterase (PME) contains PME domain and PMEI domain Arabidopsis thaliana
posttranslationally inserted transmembrane proteins have only one or at most two transmembrane domains maize
ELO proteins contain highly conserved histidine box
Q15H exchange in ppcB PEPC introduces positive charge close to Ser-11 Flaveria
intracellular metabolite transporters contain α-helical transmembrane domains (TMDs)
SPINDLY (SPY) and SECRET AGENT (SEC) contain tetratricopeptide repeat (TPR) region at N terminus
(RBCL, ATCG00490) contains amino acids important for determining kinetic properties of Rubisco
(MAIL3, AT1G48120) encodes larger protein with additional phosphatase domain Arabidopsis thaliana
(TN13, AT3G04210) has predicted N-terminal transmembrane domain Arabidopsis thaliana
OsPP18 protein contains PP2C catalytic domain Oryza sativa
type II formins possess N-terminal phosphatase and tensin-related (PTEN)-like domain
dual targeting peptides (dTPs) contain 38% hydrophobic residues Arabidopsis thaliana
gene product of ZmRCAα contains two Cys residues Zea mays
GhPMEI3 contains INH sequences Gossypium hirsutum
polyubiquitins and ubiquitin extension proteins ( (eL40y, EMB2167, ERD16, HAP4, UBQ1, AT3G52590) (eL40z, RPL40A, UBQ2, AT2G36170) (RUB2, UBQ7, AT2G35635) and (ATRUB1, NEDD8, RUB1, AT1G31340) ) have repetitive domains Arabidopsis thaliana
C-terminal GAS block forms coiled-coil structure
Pp1s12_379V6 protein has LysM domain (PFAM PF01476) Physcomitrella patens
(ATWRKY45, WRKY45, AT3G01970) contains Cys2His2 zinc finger motif Arabidopsis thaliana
Ara chain in (AtCLV3, CLV3, AT2G27250) glycopeptide contributes to conformation of the peptide backbone
middle part of Rei1 (amino acid residues 145 to 261) contain two zinc fingers Saccharomyces cerevisiae
mutations in specific nonoverlapping surfaces of first and fourth helices of CC domain were introduced in specific nonoverlapping surfaces of first and fourth helices Solanum tuberosum
residues mutated in S1 and S4 would be located on surface of structure
truncated protein (ABC1, ABCI8, ATABC1, ATNAP1, LAF6, AT4G04770) ;3T lacks 34 amino acids at the C-terminus Arabidopsis thaliana
native (NTRC, AT2G41680) aggregates are redox-sensitive
A′α helix interacts with Jα helix Solanum lycopersicum
PMEIs have up-and-down four-helical bundle fold
AtPIN5 and (ATPIN8, PIN8, AT5G15100) lack central loop domain Arabidopsis thaliana
HvTrxh2 crystal structure did not contain interaction between two HvTrx1 molecules Hordeum vulgare
(NTRC, AT2G41680) has redox-sensitive quaternary structure in vitro
ThrRS–dTP(2–60) is mainly random coil in aqueous solution
wild-type (JK224, NPH1, PHOT1, RPT1, AT3G45780) can reside between Arg-495 and Asp-517 four water molecules Solanum lycopersicum
LOV2 domain is flanked by conserved N-terminal turn-helix-turn motif containing the A′α helix and a C-terminal flanking region containing the Jα helix
translated protein of the mutant (JK224, NPH1, PHOT1, RPT1, AT3G45780) of Nps1 harbors single Arg-495-to-His substitution located in a highly conserved A′α helix in the Hinge1 region Solanum lycopersicum
StCLV2 contains block of 20 leucine-rich repeats (LRRs) Solanum tuberosum
full-length cDNA of LesaPMEI14890 shows typical PMEI domain Lepidium sativum
Cytochrome f (Cyt f) has transmembrane domain very close to C-terminus maize
Rx1 CC domain has compact four-helix bundle structure
interaction surface of CC on NB-ARC-LRR is mostly shielded by CC in wild-type protein
S4 substitutions do not disrupt overall structure of CC
(NIP7;1, NLM6, NLM8, AT3G06100) possesses conserved Tyr in helix 2 (Y81) Arabidopsis thaliana
FISL motif of (ATSOS2, CIPK24, SNRK3.11, SOS2, AT5G35410) is located in C-terminal regulatory region of (ATSOS2, CIPK24, SNRK3.11, SOS2, AT5G35410) Arabidopsis thaliana
(NTRC, AT2G41680) quaternary structure ranges from oligomeric to dimeric state
Lateral Organ Boundaries (LOB) proteins contain C-terminal GAS block
Ser at position 147 in PPCKA can form intramolecular or intermolecular hydrogen bonds Flaveria
FAE1-KCSs have only two membrane spanning regions at the N-terminus
targeted residue in chloroplastic heat shock protein 70B (HSP70-5, Hsp70b, AT1G16030) is located in ATPase domain of the protein Chlamydomonas reinhardtii
mutation in Hinge1 region is located in highly conserved A′α helix in the N-terminal helix-turn motif prior to the LOV2 domain Solanum lycopersicum; Chlamydomonas reinhardtii
well-conserved protein family in Eukaryota contains (AtKIN17, KIN17, AT1G55460) DNA/RNA-binding domain
differences in homeodomain (HD) suggest more divergent binding properties of LG3 Zea mays
G103R and G286D substitutions is plausible that these substitutions induce overall change in the structure of (PBS1, AT5G13160) Arabidopsis thaliana
lack of signal in IEM probably due to epitopes not accessible in folded protein Crocus sativus
truncated protein (ABC1, ABCI8, ATABC1, ATNAP1, LAF6, AT4G04770) ;3T compared to wild-type protein (ABC1, ABCI8, ATABC1, ATNAP1, LAF6, AT4G04770) ;3 Arabidopsis thaliana
crystal structure of oxidized A2B2-GAPDH shows C-terminal extension (CTE) bearing internal disulfide tightly packs into cleft between A/B-subunits
C-terminal extension of B-subunits is closely homologous to C-terminal sequence of (CP12, CP12-2, AT3G62410) Arabidopsis thaliana
conserved active site motif is present at N-terminal end of helix α2
around amino acid 160 is where first secondary structure motifs of NB domain appear
(ABC1, ABCI8, ATABC1, ATNAP1, LAF6, AT4G04770) ;3T lacks 34 amino acids at the C-terminus Arabidopsis thaliana
asp2-11 creates an amino acid change furthest from PLP-binding site
cytosolic C-terminal part of Shaker alpha subunit displays ankyrin domain
plant CLEs characterized to date contain a single CLE motif
PMEIs harbor four conserved Cys residues engaged in disulfide bridge formation
yeast paralogs contain only three zinc fingers Saccharomyces cerevisiae
predicted OsWRKY55-IR protein terminates after 55 amino acids instead of the 210 amino acids of the full-length protein Oryza sativa
WRKY transcription factors (TFs) contain DNA binding WRKY domain
animal (TGS1, AT1G45231) proteins have extended N-termini embracing transcriptional regulation and other functions
(DDP1, PTM, AT5G35210) region of OsSYP132 could form short α-helical structure Oryza sativa
ptATS2a contains highly conserved NHX4D domain Phaeodactylum tricornutum
OsCAND1 protein contains (ATCAND1, CAND1, ETA2, HVE, TIP120, AT2G02560) domain (1038–1205 AA) Oryza sativa
Shaker alpha subunit consists of pore loop (P) between S5 and S6
(AtGLDP1, GLDP1, AT4G33010) and (AtGLDP2, GLDP2, AT2G26080) contain coiled-coil region Arabidopsis thaliana
(PMES, AT4G10050) identified in phytopathogenic organisms lack a proregion
(ATFLS2, FLS2, AT5G63580) does not contain YXXĖ motif in cytoplasmic tail Arabidopsis thaliana
extracellular part of DOES NOT MAKE INFECTIONS 2 (DMI2) contains MLD domain and LRR Medicago truncatula
residues mutated in S4 play a role in intramolecular helix-helix interactions Nicotiana benthamiana
OsPIN5a, OsPIN5b, OsPIN5c, and OsPIN8 lack central loop domain Oryza sativa
HisPheAsp motif in the catalytic site of domain 1 of expansins is not conserved in expansin-like (AtNPF6.3, ATNRT1, B-1, CHL1, CHL1-1, NPF6.3, NRT1, NRT1.1, AT1G12110) protein
Hinge1 region encompasses A′α helix
Ile-106Leu substitution lies immediately adjacent to Phe-107 in NDPS1-M4 and NDPS1-M2 constructs Solanum habrochaites
OsCKX4 contains FAD-binding domain Oryza sativa
homotypic interactions of truncated CC (H3-H4) are likely artifact caused by exposure of residues buried in complete CC structure
NMR spectroscopy-determined structure of (At-SCL33, ATSCL33, SCL33, SR33, AT1G55310) 6-120 reveals four-helix bundle
ABF family members contain C-terminal (AtbZIP, bZIP, AT1G68880) domain
crystal structure analysis of a homologous Archaeoglobus fulgidus ammonium transporter (AMT) suggests that C-terminus interacts physically with cytosolic loops of the neighboring subunit Archaeoglobus fulgidus
barley (AtSWEET8, RPG1, SWEET8, AT5G40260) possesses tandem kinase domains Hordeum vulgare
region δ of PM3A consists of four polymorphic residues crucial for NLR function (δ1–4) and one that increases immune response (δ5) Nicotiana benthamiana
S4 transmembrane segment incorporates positively charged amino acids
(ATCOP1, COP1, DET340, EMB168, FUS1, AT2G32950) SUPPRESSOR 4 (CSU4, AT5G63440) encodes a protein with domain of unknown function
two persulfidation modification sites in (ATOST1, OST1, P44, SNRK2-6, SNRK2.6, SRK2E, AT4G33950) are adjacent to catalytic loop of the kinase
(ATNUDT1, ATNUDX1, NUDX1, AT1G68760) proteins are predicted to encode proteins of around 150 amino acids Rosa chinensis; Rosa x wichurana; Arabidopsis thaliana
mutation is more likely to have significant effect on PM3A immune response when it is located towards C-terminus of protein Triticum aestivum
major phosphosites of (AtC3H66, TZF9, AT5G58620) flank CCCH domain
five AVRPM3 A2/F2 variants are characterized by different mutation in different parts of AVR proteins Nicotiana benthamiana
retention of aromatic tyrosine at the +1 position of the catalytic serine in green algae requires other conserved sites
mutagenesis at the +1 position in human LCAT (L206M and L206Y) is likely to change the conformation of the active site pocket Homo sapiens
most C-terminal peptides were derived from the region 189–198, which forms the flexible C-terminal tail
Two crystallographic structures of cytosolic GS enzymes in plant-based systems exist in Medicago truncatula GSII-1a and Zea mays ZmGSII-1a Medicago truncatula; Zea mays
Clade 'b' Dof genes contain the FKF2-binding domain
Clade 'b' Dof genes contain the GI-binding domain
(ARC2, CH-CPN60A, CPN60A, Cpn60alpha1, CPNA1, SLP, AT2G28000) domain of Rpi-chc1.1 contains Motif 2, RNBS-D motif, and two copies of MHDL motif Solanum chacoense
mutated (ABA1, ATABA1, ATZEP, IBS3, LOS6, NPQ2, ZEP, AT5G67030) protein in SO lacks domains in C-terminus region Capsicum annuum
ThrRS–dTP(2–60) becomes structured in all membrane mimetic media tested
RNA-binding proteins (RBPs) contain RNA-recognition motif (RRM)
(ATFH8, FH8, FORMIN 8, AT1G70140) contains transmembrane domain (TM) Arabidopsis thaliana
(FAD4, FADA, AT4G27030) protein in yeast under all conditions showed monomer form as dominant Saccharomyces cerevisiae
RLPs lack intracellular kinase domain
six Casparian strip membrane domain protein genes encode four-membrane-spanning proteins Arabidopsis thaliana
Ht2/Ht3 protein contains transmembrane domain Zea mays
GSL/CalS proteins contain two regions of multiple transmembrane domains
mutation is more likely to have significant effect on PM3A immune response when it is located on inner arc of 3D model or close to it Triticum aestivum
mature and secreted form of RALF peptides contains four cysteines that form di-sulfide bridges
peptide 4–12 forms a part of switch II
BnaNPC4s have putative active site residues Brassica napus
(NPC5, AT3G03540) lacks C-terminal cysteine Arabidopsis thaliana
homodimers have two functionally equivalent active sites
each protein contributes to active site of its binding partner
substrate binding domain for SAM (LNLDKVF) is located three amino acids downstream of the mutated Pro-132 Oryza sativa
two putative ABI3s from A. shenzhenica and Nicotiana obtusifolio were predicted to lack B3 domain due to premature stop codon Apostasia shenzhenica; Nicotiana obtusifolio
(AtRALFL8, RALF8, RALFL8, AT1G61563) contains YITY motif
mutation is more likely to have significant effect on PM3A immune response when it is within LRR core motif Triticum aestivum
catalytic central loop possesses glycosyltransferase domain
thaumatin family signature comprises 16 conserved cysteine residues involved in eight disulfide bonds
(Toc90, AT5G20300) has conserved G- and M-domain Arabidopsis thaliana
W25 and N73 in (TOL6, AT2G38410) are conserved in all nine TOL proteins Arabidopsis thaliana
(AS2, AT1G65620) cDNA contains zinc-finger (ZF) motif (residues 10–24) Arabidopsis thaliana
mutation is more likely to have significant effect on PM3A immune response when it is solvent-exposed Triticum aestivum
GSL/CalS proteins contain N-terminal regulatory region
receptor-like kinases (RLKs) are defined by signal peptide, extracellular receptor domain, transmembrane domain, and cytoplasmic kinase domain
P532 is one of the two core residues of the non-canonical VP motif of (AT-PHH1, ATCRY2, CRY2, FHA, PHH1, AT1G04400) Arabidopsis thaliana
very N-terminal α1 helix of (ZAR1, AT3G50950) forms funnel-shaped structure
(GAT, GAT1_2.1, AT1G15040) domain is three-helix bundle structure
VHS domain consists of eight α helices arranged in a superhelix
Rlm9 protein contains C-terminal WAK domain
PIP5K1–9 from Arabidopsis contain multiple Membrane Occupation and Recognition Nexus (MORN) motifs Arabidopsis thaliana
predicted amino acid sequences of (FHY2, FRE1, HY8, PHYA, AT1G09570) in RLD and Col ecotypes are identical amino acid sequences Arabidopsis thaliana
putative Ci transport channel of LCI1 has extremely electronegative interior surface Chlamydomonas
replacement of the first Gly by a Pro in AtPDAT1 and AtPDAT2 results in absence of two β-sheets that may be essential for lipase activity Arabidopsis thaliana
four asp suppressor mutations create single amino acid changes near active site of the enzyme
hairpin loop/tongue-like structure extending from the PHY domain contacts GAF domain in proximity to the chromophore Arabidopsis thaliana
PpAN2-1 lacks plant-specific C-terminal region of 200 amino acids Physcomitrella patens
four conserved cysteines is characteristic essential for RALF activity
tandemly arranged ubiquitin-binding domains (UBDs) are present in all other TOLs
remaining three (ABI3, AtABI3, SIS10, AT3G24650) paralogues encode truncated (ABI3, AtABI3, SIS10, AT3G24650) protein due to stop codon after B2 domain Xerophyta humilis
CO protein has three distinct domains Arabidopsis thaliana
members of Cr RLK1L subfamily are characterized by putative carbohydrate-binding malectin domain in their extracellular domain
IHD motif of PM3 receptors is variant of the MHD motif
majority of resistance-enhancing and -reducing residues cluster on area on inner arc surface towards C-terminus of LRR domain Triticum aestivum
BnaNAC60 protein contains conserved NAC domain Brassica napus
phosphosite S628 in Dw2 is located near insertion domain present in most AGCVIII kinases Sorghum bicolor
AtNF-YA6 displays elongated structure hosting two helices A1 and A2 Arabidopsis thaliana
His (H) amino acid in HCxxGxxR(T/S) motif is important for P loop formation
tryptophan residue (W133 in Lhcx1) is part of motif 2 Phaeodactylum tricornutum
R proteins contain Apaf-1, R-protein, and CED-4 homology (ARC) subdomain
residue Ile-161 is identified as conserved in GLN1;1, GLN1;2, and OsGS1;1 Arabidopsis thaliana; Oryza sativa
ELL1-like proteins share conserved P450 domain
Thioredoxins (Trxs) expose WC(G/P)PC pentapeptidic motif
carboxyl groups of aspartates and glutamates in CrTRXz selectivity surface expose −1 charge at physiological pH Chlamydomonas reinhardtii
LRRs 8 to 29 from Rpi-chc1.1 overlap with LRRs 16–19 from Rpi-chc1.2 Solanum chacoense; Solanum berthaultii
EG16 clade endoglucanases lack characteristic XET_C domain
common RNase-like fold may serve as structural scaffold to support multiple functions Blumeria graminis
N-terminal (EF1 and EF2 containing) domain is located near N-terminus of the kinase Toxoplasma gondii
second motif in (GAT, GAT1_2.1, AT1G15040) domain is also conserved albeit not as stringently Arabidopsis thaliana
PpAN2-2 lacks plant-specific C-terminal region of 200 amino acids Physcomitrella patens
CO amino acid sequence shows conservation of three valine–proline pairs Arabidopsis thaliana
C-terminal extensions of Rca-α and Rca-β isoforms are intrinsically disordered intrinsic disorder
redox residues of CrTRXz are positioned at canonical sites Chlamydomonas reinhardtii
WRKY transcription factors typically contain one or more WRKY domains
small proteins contain conserved C-terminal CLE domain
arabinoside chains have important roles in peptide conformation
plant lipoate-protein ligases show adequate sequence identity over N-terminal range of about 200 to 210 amino acids
hydrophobic residues in the heptad repeats of the helices form hydrophobic core of the helix bundle
CAPRICE (CPC, AT2G46410) has only single R domain Arabidopsis thaliana
polymorphisms in Ht2/Ht3 protein sequence were located in putative extracellular domain Zea mays
α-helix is aligned along and probably stabilizes vast β-sheet of the larger REP subdomain
carboxyl side chain of D84 in CrTRXz points in direction of resolving C93 at distance of 6.4 Å Chlamydomonas reinhardtii
chaperone–histone complexes have structural basis
Ser residues at N-terminal conserved regions (C-region) of (AtbZIP, bZIP, AT1G68880) factors are located at N-terminal conserved regions (C-region)
HCxxGxxR(T/S) motif forms P loop for binding to phytate
ubiquitin receptors usually have additional modular structures
(XET, XTH33, AT1G10550) enzymes differ from XEH by presence of C-terminal extension XET_C
B-box (BBX) proteins possess at least one or two tandem B-box domains at N-terminal region
leucine-44 in (APD9, FGT2, AT5G66080) resides at N-terminus of the PP2C catalytic domain (Smart domain SM00332, amino acid 39–354) Arabidopsis thaliana
X-ray structure of Lhcx1 protein is required for assignment of pigment-binding site to Chl a or Chl c Phaeodactylum tricornutum
amino acids 51–78 of (ARA-7, ARA7, atARA7, ATRAB-F2B, ATRAB5B, ATRABF2B, RAB-F2B, RABF2B, AT4G19640) build the Switch II/interswitch region in (ARA-7, ARA7, atARA7, ATRAB-F2B, ATRAB5B, ATRABF2B, RAB-F2B, RABF2B, AT4G19640) crystal structures
adjacent C105 and C106 residues in AtFLN1 are buried within structure Arabidopsis thaliana
AtFLN2 includes nine cysteines Arabidopsis thaliana
(JK218, NPH3, RPT3, AT5G64330) protein contains coiled-coil domain Arabidopsis thaliana
γ-zein domains of zein–GFP are not structurally related to phaseolin domains of sGFP418
glycosyltransferases (GTs) adopt GT-A fold
glycosyltransferases (GTs) adopt GT-B fold
C. chinense (AtPR4, HEL, PR-4, PR4, AT3G04720) protein structure lacks helix 1 Capsicum chinense
BjCET3 and BjCET4 were found to contain conserved LZ motif and CDF sequences Brassica juncea
(EVE1, AT4G03350) protein contains ubiquitin domain Arabidopsis thaliana
Stb6 protein does not contain C-terminal WAK domain Triticum aestivum
OsTrxh2 contains α-helices and β-strands (α1β1α2β2α3β3α4β4β5α5) (1–121 aa) Oryza sativa
AtSRO contains putative PARP catalytic domain Arabidopsis thaliana
(XTH11, AT3G48580) and (XET, XTH33, AT1G10550) share common C-terminal functional domain (XET-C) Arabidopsis thaliana
C281 in AtMRL7 is surrounded by marked electropositive potentials Arabidopsis thaliana
PITG_16243 and PITG_09577 contain RXXR-EER and RXXLR-EER motifs Phytophthora infestans
group-IV (floral) clade members have standard pfam GH16_2 and XET_C domains
major domains of ΔSP (OOP, TOP1, AT5G65620) are located much closer to each other resulting in a tighter active site Arabidopsis thaliana
N-terminal sequence of Ht2/Ht3 contains cysteine-rich galacturonan binding domain Zea mays
putative REP C-terminus-binding region of (ATRAB-E1D, ATRAB8C, ATRABE1D, RAB-E1D, RAB8C, AT5G03520) did not show any changes in H-D exchange upon complex formation
C290, C307, C322, C326, and C419 in AtFLN2 are present at predicted surface Arabidopsis thaliana
Fo18438 contains RTA1-like domain Fusarium oxysporum
OsPARP1 possesses canonical domains of the PARPs family Oryza sativa
blue stars indicate motif A, GX 3 DX 3 R
RXLR effectors contain conserved Arg-x-Leu-Arg (RXLR) motif
(112A-2A, EMB30, GN, GNOM, MIZ2, VAN7, AT1G13980) protein consists of HDS1–3 domains (Homology Downstream of SEC7 domains 1-3) Arabidopsis thaliana
cytochrome f has internal network of water molecules
activated (ZAR1, AT3G50950) has protruding, solvent-exposed N-terminus
ZmNL4 harbors two conserved domains (PLN02193 superfamily domain and SMC_prok_B superfamily domain) Zea mays
smallest motif is 15 aa stretches
thiol group of C90 in CrTRXz points inwards in direction of TRX core Chlamydomonas reinhardtii
nine amino acid polymorphisms particularly situated in solvent-exposed domain (xxLxLxxxx) of every LRR Solanum chacoense; Solanum tuberosum
(ABC1, ABCI8, ATABC1, ATNAP1, LAF6, AT4G04770) kinases (ABC1Ks) migrate at 140 kDa Arabidopsis thaliana
(112A-2A, EMB30, GN, GNOM, MIZ2, VAN7, AT1G13980) protein consists of DCB domain (Dimerization and (Cyclophilin, AT2G36130) B Binding domain) Arabidopsis thaliana
Shaker alpha subunit consists of hydrophobic core with six transmembrane segments (S1-S6)
crystal structures of ΔSP (OOP, TOP1, AT5G65620) and (TOP2, AT5G10540) reveal dramatic structural differences Arabidopsis thaliana
dynamic elements in CrTRXz are located far from redox site Chlamydomonas reinhardtii
all PexRD12/31 effectors are small proteins Phytophthora infestans
SCA possesses eight conserved cysteine residues
SPL11-like protein (Os08g37570) contains U-box and armadillo repeat domains Oryza sativa
removal of the C-terminal tail of REP is likely not to preclude formation of any of the well-defined structural motifs Arabidopsis thaliana
highest B-factors in CrTRXz are grouped at N- and C-terminal ends and loop connecting strands 3 and 4 Chlamydomonas reinhardtii
asparagine and glutamine residues in selectivity surfaces potentially behave as hydrogen bond donors or acceptors Chlamydomonas reinhardtii
CC domain of Rpi-chc1.1 contains N-terminal MADA motif, four predicted α-helices, and typical hhGRExE Solanum chacoense
LRR3 and (LRR4, AT3G14470) contain central VLDL motif Solanum chacoense
N-terminal extension of (AtGRP4, GR-RBP4, GRP4, RBGA4, AT3G23830) affects overall structure of (AtGRP4, GR-RBP4, GRP4, RBGA4, AT3G23830) Arabidopsis thaliana
(ATXIK, XI-17, XI-K, XIK, AT5G20490) tail domain lacks ATPase domain
(SPPA, SPPA1, AT1G73990) protease family contains two conserved potentially catalytic domains
C-terminal region forms dimerization interface Synechocystis
all enzymes compared exhibit α-helical C-termini plant; bacteria; yeast
mature CrTRXz sequence possesses two cysteines: Cys N (C90) and Cys C (C93) Chlamydomonas reinhardtii
Side chain thiols of C90 and C93 in CrTRXz are modeled at 3.1 Å distance in reduced state Chlamydomonas reinhardtii
aforementioned side chains in CrTRXf2 and CrTRXz crystal structures are located at protein surfaces and point polar groups to solvent Chlamydomonas reinhardtii
modified Lhcx1 proteins still contain second glutamic acid (E) in position 205 Phaeodactylum tricornutum
Dof gene clades 'a' and 'b' are unified by their possession of the highly conserved Dof domain motif
crystallographic A:B dimer of CrTRXz is formed by subunit A at positions x, y, z and subunit B at positions −x+2, −x+y+1, −z+2/3 Chlamydomonas reinhardtii
TCP domain adopts three short β-strands followed by a helix–loop–helix structure
motif analysis revealed that eight conserved motifs are present across all GS proteins
Clade 'b' Dof genes contain the Topless (TPL, WSIP1, AT1G15750) -binding domain
amino groups of lysines in CrTRXf2 selectivity surface expose +1 charge at physiological pH Chlamydomonas reinhardtii
AtFLN1 possesses five cysteines Arabidopsis thaliana
all PexRD12/31 effectors include signal peptide in N-terminus, effector domain in C-terminus, and conserved RXLR and EER motifs in center Phytophthora infestans
myosin XI protein (1536-amino-acid) is short variant of Mp myosin XI Marchantia polymorpha
Ser 185 is located within highly conserved amino acid region just before the (ANAC034, ANAC035, AtLOV1, LOV1, NAC035, AT2G02450) domain Arabidopsis thaliana
most conserved residues are located in internal parts
two of three qE-essential lumenal-exposed acidic amino acids of LhcSR are present in Lhcx1/2/3 Phaeodactylum tricornutum
Motif 2 is located at helix C Phaeodactylum tricornutum
Arabidopsis GLN1;5 protein has flexible glycine (Gly187) instead of Ser187 Arabidopsis thaliana
SPL33 protein contains non-functional zinc-finger domain Oryza sativa
Arabidopsis (L1L, NF-YB6, AT5G47670) /AtNF-YC3 histone fold domain (HFD) dimer has (NF-YC3, AT1G54830) Lys67 and His69 facing putative DNA-binding region Arabidopsis thaliana
fructose-bisphosphate aldolase (FBA) typically exists as homotetramer Arabidopsis thaliana
(112A-2A, EMB30, GN, GNOM, MIZ2, VAN7, AT1G13980) protein consists of SEC7 domain (Secretory 7 - Catalytic domain of GEF) Arabidopsis thaliana
WY domain characteristically contains two hydrophobic residues (typically (TRP, AT3G56390) (W) and Tyr (Y))
(ATP8, AtRCD1, CEO, CEO1, RCD1, RIMB1, AT1G32230) contains WWE protein–protein interaction domain Arabidopsis thaliana
P134 in CrTRXz faces redox site at 3.5 Å and 4.6 Å from C93 and C90 respectively Chlamydomonas reinhardtii
BORON TRANSPORTER 1 (AtBOR1, BOR1, AT2G47160) contains three tyrosine-based motifs in its big cytosolic loop
phototropins possess two LOV domains ( (ANAC034, ANAC035, AtLOV1, LOV1, NAC035, AT2G02450) and LOV2) in their N-terminal region
C-terminal amphipathic domain of oleosins is largely conserved as amphipathic alpha-helical structure
serine phosphorylation site at position 75 in p FNRI is first residue of p FNRI SKKQ isoform Triticum aestivum
T104 position in wheat p FNRII at the closure of hinge between FAD-binding and NADP(H)-binding domains Triticum aestivum
NB-LRR proteins are characterized by nucleotide-binding and leucine-rich repeat domain
known three-dimensional structures of SCO proteins were used to analyze location of non-conserved residues
CaUBP12 protein harbors MATH domain Capsicum annuum
W133 reaches directly into proposed Dd/Dt binding pocket Phaeodactylum tricornutum
orientation of Dd/Dt molecule in Lhcx is presumably different from orientation in Lhcf Phaeodactylum tricornutum
Rp1-D21 harbors three main domains: CC domain, NB-ARC domain, and LRR domain Zea mays
N-terminus of NIP5;1 contains three distinctive Thr-Pro-Gly repeats Arabidopsis thaliana
(SUE4, AT3G55880) locus is predicted to encode unknown small membrane protein with four membrane-spanning domains Arabidopsis thaliana
CC-NB-LRR proteins have coiled-coil domain at their N terminus
structural change in βC-βD requires disruption of hydrophobic interactions between side chain of F104 and side chain of I102 Oryza sativa
replacing tyrosine with methionine in CrPDAT at position Y402M is likely to lead to loss of non-polar interactions with other amino acids Chlamydomonas reinhardtii
hydrophobic domain of oleosins has been modeled as anti-parallel helical structure anchored in TAG core
tomato AGPase contains three isoforms of the large subunit Solanum lycopersicum
CytP450 pattern is highly conserved in CytP450 enzymes
most MSTs have 12 membrane-spanning domains
β-conglycinin trimeric structure is similar to other 7S globulins Glycine max
intrinsically disordered regions (IDRs) contain more charged residues than hydrophobic amino acids
hydrophobic patch in LysM2 is unique to NFR5/NFP
central residue at position Ile161 is critical and a major determinant for thermal stability and differentiating the physicochemical make-up of maize (GPP2, GS1, AT5G57440) isozymes Zea mays
redox site microenvironment and structural-dependent functional features of TRXs are present and canonical in CrTRXz Chlamydomonas reinhardtii
two cysteines in AtMRL7 are predicted at solvent-exposed surface of protein Arabidopsis thaliana
group-IV (floral) clade members lack loop-2 insertion
BnaNPC4s have same putative phosphoesterase domain Brassica napus
changes in conformation might be subtle
valine in position 425 is closely located to P450 pattern (Prosite pattern PS00086)
four distinct RNase sequences contain conserved active site (CAS) cassettes that define RNase T2 family Petunia hybrida
(AUR3, BRU6, GH3-2, GH3.2, YDK1, AT4G37390) coding sequence contains all three sequence motifs involved in ATP/AMP binding Vitis vinifera
YTH domain contains methyl-group-binding hydrophobic aromatic cage
narrow substrate range in human NMTs is due to conformation restrictions Homo sapiens
most cryptochromes are distinguished from photolyase by carrying unique C-terminal extensions
family 48 carbohydrate-binding module (CBM) is located upstream of first predicted transmembrane domain Griffithsia monilis
pea APX homodimer has one haem group per monomer Pisum sativum
most conserved motif probably defines secondary protein structure Zea mays
(ATWRKY33, WRKY33, AT2G38470) contains segment of ~100 amino acid residues on C-terminal side of C-terminal WRKY domain Arabidopsis thaliana
C-terminus of REP seemed to be uncomplexed in all analyzed plant REP–Rab structures
MdRNL1, MdRNL2, and MdRNL3 contain LRR domain Malus × domestica
GsBET11a TMD deletion or truncation possibly changes conformation of cytoplasmic domain of GsBET11a Glycine max
ZmMC1 contains three domains: prodomain and P20 and P10 domains Zea mays
high-resolution crystal structure of TRXz unravels conserved native folding compared to other structurally solved TRXs Chlamydomonas reinhardtii
helices 3 and 1 in CrTRXz group higher than average B-factors Chlamydomonas reinhardtii
CrTRXf2 selectivity surface will accumulate net charge of +6 Chlamydomonas reinhardtii
interaction surface of thioredoxin z dimer is distant from redox site Chlamydomonas reinhardtii
VpPsbP contains C-terminal PsbP domain Vitis piasezkii
OsWRKY62.1 contains putative N-terminal coiled-coil domain Oryza sativa
(ATKCO1, ATTPK1, KCO1, TPK1, AT5G55630) vacuolar-sorting motif is based on complex tertiary structure
second cytoplasmic loop region includes conserved motif H-D/E-X-HX-W-X-L-T-X 8 -H Brassica juncea
ZmAO3 protein contains molybdenum cofactor (MoCo)-binding domain Zea mays
central hydrophobic domain of oleosins contains conserved proline knot
alignment studies with F3′Hs from C. sulphureus and further Asteraceae species were performed to identify regions which determine CH3H activity Cosmos sulphureus; Asteraceae
SWI3C1 possesses all domains characteristic of the SWI3 protein family Zea mays
motifs I to IV in HAD superfamily are referred to as conserved catalytic elements
stop codon in Mtnf-ya1-1 occurs upstream of two main conserved regions found in NF-YA proteins Medicago truncatula
(AtPP2CF1, EGR1, AT3G05640) catalytic domain adopted overall conformation similar to (ABI1, AtABI1, AT4G26080) in PYL1-(+)-ABA- complex Arabidopsis thaliana
LOV (light, oxygen, or voltage) domains resemble subclass of the PAS domain
tomato AGPase contains two isoforms of the small subunit Solanum lycopersicum
NONPHOTOTROPIC HYPOCOTYL 3 (JK218, NPH3, RPT3, AT5G64330) contains coiled-coil domain Arabidopsis thaliana
SRS1–3 are located near N-terminal end of the enzymes
TIR-NB-LRR proteins contain Toll and interleukin-1 receptor-like domain
repetitive domains of α-gliadins and γ-gliadins may form extended structures
serine residue at position 405 in (ATPAO2, PAO2, AT2G43020) is present at position 405 Arabidopsis thaliana
(TN13, AT3G04210) has conserved catalytic glutamic acid residue (E139) Arabidopsis thaliana
lumenal loop is region between helix B and helix C Phaeodactylum tricornutum
(AtNPC4, NPC4, AT3G03530) has longer C terminus
(112A-2A, EMB30, GN, GNOM, MIZ2, VAN7, AT1G13980) protein consists of HUS domain (Homology Upstream of SEC7 domain) Arabidopsis thaliana
Sp2 fragment of NtSyp121 incorporates analogous SNARE domains (HA/HB/HC + H3)
(ATGRP2, GR-RBP2, GRP2, RBGA5, AT4G13850) contains N-terminal extension Arabidopsis thaliana
OsGRP1 harbours N-terminal extension Oryza sativa
TPR motif is composed of two anti-parallel alpha helices separated by a turn
sequence DEIDFEFLGNRTG is present in HcXTH1 Hymenaea courbaril
(GEX3, AT5G16020) contains b-propeller repeats (PQQ domains)
ZmAO3 protein contains FAD-binding domain Zea mays
additional amino acid sequence at N-terminal region of (AtGRP4, GR-RBP4, GRP4, RBGA4, AT3G23830) adopts highly disordered structure Arabidopsis thaliana
(ATXIK, XI-17, XI-K, XIK, AT5G20490) tail domain lacks actin binding domain
proposed NADPH-binding motif G(5X)IPXG is located in loop between transmembrane domains 4 and 5 Gossypium hirsutum
PH domain is present in higher plant RopGAPs
(ARA8, ATPCS1, CAD1, PCS1, AT5G44070) (2) (POPTR_0014s18420.1) has same number of conserved cysteine motifs Populus trichocarpa
maize C4-form PEPC structure was resolved as active state not complexed with aspartate Zea mays
protein is rich in amino acid residues P, V, and S Prunus persica
animal PKC isoforms contain conserved domains C1–C4
CaUBP12 protein harbors Cys-box domain Capsicum annuum
certain dissimilarities in the motif arrangement between the isozymes such as GLN1;5 lacking motif 8 at C-terminal end, and a gap between motif 2 and 3 in GLN1;2 Arabidopsis thaliana
C204, C398, and C418 in AtFLN1 probably do not form intramolecular disulfide bridges Arabidopsis thaliana
20-residue peptide centered on redox target C68 in AtPRIN2 contains three arginines and one lysine Arabidopsis thaliana
oleosins all possess central hydrophobic domain
(AtGRP4, GR-RBP4, GRP4, RBGA4, AT3G23830) contains additional amino acid residues in front of domain sequence encompassing RNP2 compared with (ATGRP7, CCR2, GR-RBP7, GRP7, RBGA3, SRBP1, AT2G21660) Arabidopsis thaliana
HSP (STI, AT2G02480) contains Sti1 domains Agrostis scabra; Agrostis stolonifera
region 140–151 folds as part of the RBP
nucleophilic C90 of CrTRXz displays 13.56-Ų solvent-accessible area Chlamydomonas reinhardtii
fructose-bisphosphate aldolase (FBA) at 180 kDa is consistent with homotetramer of FBA subunits Arabidopsis thaliana
structural proteins in xylem cell walls contain highly repetitive sequence domains
D to G substitution in nicastrin motif could have profound influence on polar character of the domain
Pgl (ATPGIP1, PGIP1, AT5G06860) contains two putative β-sheets, B1 and B2 Pennisetum glaucum
(JK218, NPH3, RPT3, AT5G64330) protein contains BTB/POZ domain Arabidopsis thaliana
sorting nexins (SNXs) are defined by presence of PHOX homology domain
WUS-box is located downstream from HD domain
VvRopGAP1–VvRopGAP4 proteins contain CRIB motifs Vitis vinifera
residue differences between VvGST5 and VvGST1 fell in two of ligand-binding regions Vitis vinifera
both genes code for critical Cys58 residue Populus
Ala residue is found at this site in other isoforms of PEPC
GbAGL1 deduced peptide contains AG motifs I and II Gossypium barbadense
five cation-efflux transporters from Brassica juncea exhibit six predicted transmembrane domains (TMs) Brassica juncea
EsM1Pase2 and its orthologues do not feature FLAP motif Ectocarpus siliculosus; Micromonas
third SKP1-like gene contains C terminal domain and the WAFE motif Malus domestica
(ATSYP73, SYP73, AT3G61450) transmembrane domain is not predicted to assume wedge-like structure Arabidopsis thaliana
globular carboxy-terminal domain (CTD) harbors signature cullin homology domain (CH)
DDB1 is 127 kDa protein
(TRP, AT3G56390) 32 of mature Trx-o is exposed to bulk phase Pisum sativum
pea type II Prx protein showed highly conserved peptide regions around the conserved cysteine residues: VPGAFTPTCS and CISVNDPFV Pisum sativum
mix of enantiomeric determinants in AdGDS1 indicates that further structural characterization may be required to locate actual enantiomeric determinants Actinidia deliciosa
protein disulphide isomerases contain at least two thioredoxin domains
V-H+ -PPase is proton pump consisting of a single polypeptide
most PUB proteins carry tandem armadillo (ARM) repeats Arabidopsis thaliana
POPTR_0014s18420.1 had many other cysteine motifs (five) conserved across (ARA8, ATPCS1, CAD1, PCS1, AT5G44070) from various species Populus