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tissue-specific gene expression

10581 relationships annotated with this phrase. Showing first 500 of 10581.
Source entity Relationship Target entity Species
GmIPT3pro-GUS signal shows same expression patterns in lateral root primordium, root maturation zone, and root tip Glycine max
OsMTP1 is preferentially expressed in roots, aleurone layer, and embryo of seeds Oryza sativa
ZmRCAα and ZmRCAβ transcripts showed no or very low signal in roots Zea mays
ZmBELL10 has especially high transcript levels in stalk Zea mays L.
OsMTP1 expression is high in root cell sap, lateral root, whole roots, aleurone layer, and embryo of seeds Oryza sativa
ProBpMADS11:GUS transgenic plants show expression of BpMADS11 in leaf margins Betula pendula
miR4407 is expressed in all cell types in elongation and meristematic regions Glycine max
ProOsMTP1:GFP transgenic line shows strong GFP signal in lateral roots Oryza sativa
SlCIPK23 and SlCBL1 were expressed to a higher extent in roots than SlCBL9 Solanum lycopersicum
GOLVEN2 (CLEL 9, GLV2, RGF9, AT5G64770) is shoot-specific gene Arabidopsis thaliana
DTN1 transcripts show low levels in tiller bud, spikelet, or root Oryza sativa
OsMTP1 level in root is 10-fold higher than OsMTP1 level in leaf Oryza sativa
TcGDS transcripts are most abundant in bract and receptacles Tanacetum cinerariifolium
(NRT1.12, AT3G16180) expression could be found in major vein of cauline leaves, junction of silique and pedicel, and apex of silique Arabidopsis thaliana
(ML3, AT5G23820) expression is restricted to epidermis Arabidopsis thaliana
GDS expression occurs in cortex cells surrounding vascular bundle Chrysanthemum morifolium
(AtNPF1.2, NPF1.2, NRT1.11, AT1G52190) expression could be found in major vein of cauline leaves, junction of silique and pedicel, and apex of silique Arabidopsis thaliana
pGLV2::GUS showed more robust GUS signal in shoots than in roots Arabidopsis thaliana
OsHMGB1 is expressed in variety of tissues Oryza sativa
OsMTP1 level in roots is significantly lower in (GCS1, HAP2, AT4G11720) accessions Oryza sativa
GDS promoter activity is visible in veins of leaves and petiole Chrysanthemum morifolium
DTN1 transcripts show relatively high levels in leaf, sheath, and stem Oryza sativa
(NRT1.12, AT3G16180) pro:GUS transgenic plants showed GUS staining mainly in major veins Arabidopsis thaliana
OsMTP1 shows markedly higher expression in bran Oryza sativa
BpMADS11 is expressed at highest level in mature leaves Betula pendula
ProBpMADS11:GUS transgenic plants show expression of BpMADS11 in apical buds Betula pendula
ProBpMADS11:GUS transgenic plants show expression of BpMADS11 in roots Betula pendula
OsMTP1 is expressed in root Oryza sativa
strong GUS activity was detected in xylem, phloem, parenchyma, and mesophyll cells of leaves Oryza sativa
OsMTP1 is expressed in leaf sheath Oryza sativa
SlSKOR was primarily expressed in tomato roots Solanum lycopersicum
pBdTHX1::GUS is absent or expressed at very low levels in mature leaves Brachypodium distachyon
OsOle18 is primarily expressed in bran Oryza sativa
ProOsMTP1:GFP transgenic line shows no GFP signal in endosperm Oryza sativa
PER transcript levels are 10-fold higher in roots than in other organs Oryza sativa
pBdTHX1::GUS is expressed in young internodes Brachypodium distachyon
EPP transcript levels are 300-fold higher in roots than in other organs Oryza sativa
pBdTHX1::GUS shows no GUS staining in mature vascular bundles Brachypodium distachyon
5' and 3' genomic regions flanking phas gene are sufficient to confer seed-specific expression pattern Phaseolus vulgaris
(ATMSRB1, MSRB1, AT1G53670) is preferentially expressed in leaves and other green organs Arabidopsis thaliana
Os03bZIP is expressed in shoot and leaf Oryza sativa
(TAR1, AT1G23320) expression in vegetative tissues is exceedingly low, less than 100–500-fold compared to (TAR1, AT1G23320) expression in developing endosperm Zea mays
(ATFH8, FH8, FORMIN 8, AT1G70140) promoter is restricted to vascular tissue in hypocotyl and roots Arabidopsis thaliana
BdCSLF6 is highly expressed in endosperm Brachypodium distachyon
S. foetida homolog had 56 occurrences in cotyledon and embryo of developing seeds Steculia foetida
pBdTHX1::GUS is expressed in seedlings Brachypodium distachyon
pBdTHX1::GUS is absent or expressed at very low levels in internodes Brachypodium distachyon
cDNA sample preparation method was successfully adopted to compare gene expression responses in vascular and nonvascular regions in cotyledons
pBdTHX1::GUS is expressed in endosperm Brachypodium distachyon
stably transformed lines of tobacco and Arabidopsis containing reporter gene β-glucuronidase (GUS) flanked by 5' and 3' genomic regions of phas exhibit same pattern of developmental expression of GUS as phas in its native context Nicotiana tabacum; Arabidopsis thaliana
S. foetida LPAT (SfLPAT) is preferentially seed-expressed Sterculia foetida
Ghd7 transcripts in emerged leaf blade display gradient with higher accumulation in leaf tip than leaf base Oryza sativa
shortest transcriptional variant of PtREV is prevalent in xylem tissue Populus trichocarpa
BdCSLF6 is highly expressed in elongating stem internodes Brachypodium distachyon
β-phaseolin (phas) is completely silenced in vegetative tissue Phaseolus vulgaris
(ATMSRB7, MSRB7, AT4G21830) is more specifically expressed in roots Arabidopsis thaliana
(PSS1, AT3G59640) expression is highest in siliques Arabidopsis thaliana
RET transcript levels are more than 2,000-fold higher in roots than in other organs Oryza sativa
pBdTHX1::GUS shows GUS staining in all cells except vascular bundles Brachypodium distachyon
Os07RISBZ1 is expressed in pistil Oryza sativa
TcADH1, TcADH2, TcALDH1, TcCDS, and TcGLIP transcripts are less abundant in leaves, roots, or stems Tanacetum cinerariifolium
OsMED14_1 shows highest accumulation of mRNA in early anther and Y-leaf Oryza sativa
(S8H, AT3G12900) expression is root specific Arabidopsis thaliana
ProOsMTP1:GFP transgenic line shows strong GFP signal in embryo and aleurone Oryza sativa
BpMADS11 is expressed in roots Betula pendula
intron 3 of LeSUT1 is necessary for expression in trichomes Solanum lycopersicum
seven out of 13 PR-10 gene loci in birch encode proteins that are specifically expressed in pollen Betula pendula
RBOH1 is more abundant in tomato root and stamen Solanum lycopersicum
X. viscosa (ABI3, AtABI3, SIS10, AT3G24650) paralogues showed expression analysis with only XvABI3B expressed at appreciable levels in leaves Xerophyta viscosa
PIVC:uidA is absent in seedlings and adult root and leaf tissues Arabidopsis thaliana
shorter iso-forms are expressed in specific tissues Arabidopsis thaliana
mannan synthase (ManS) gene was specifically expressed in endosperm Cyamopsis tetragnoloba
(ATFH8, FH8, FORMIN 8, AT1G70140) promoter shows staining in root apical meristem Arabidopsis thaliana
XhLEC1 genes had mean normalised read counts < 10 across all RWC Xerophyta humilis
remaining two copies of BnaZEP are found mainly in leaves Brassica napus
XhLEC1 genes were barely expressed in leaf tissue irrespective of RWC Xerophyta humilis
transcript expression of VvRops were mainly expressed in pre-véraison berries and young leaves Vitis vinifera
R1G1B promoter is active in whole grain Oryza sativa
HCC1:GUS transgenic plants show GUS expression in embryo Arabidopsis thaliana
HAHB10 is almost undetectable in other tissues Helianthus annuus
(ATFH8, FH8, FORMIN 8, AT1G70140) promoter shows staining in root cap cells Arabidopsis thaliana
PIVC:uidA is strong in flower tissues, specifically stigma, ovary, and funiculus Arabidopsis thaliana
levels of OsFKBP20-1b transcripts in 1–2-week-old seedlings were higher in endosperm than in roots and shoots Oryza sativa
BnaA09.ZEP (zeaxanthin epoxidase) is predominantly expressed in floral tissues Brassica napus
GUS signal could hardly be detected in roots Oryza sativa
bHLH6 expression is higher in leaves than in roots Oryza sativa
transcriptional profiling can detect molecular signatures of different biological samples
(TAR1, AT1G23320) gene is endosperm-specific in expression Zea mays
GUS signal is undetectable in other tissues Arabidopsis thaliana
epigenetic profiling can detect molecular signatures of different biological samples
cell identities are established at the mechanistic level by transcription factors and epigenetic regulators
BnaC09.ZEP (zeaxanthin epoxidase) is predominantly expressed in floral tissues Brassica napus
NtCAT1 promoter is used as endosperm-specific promoter Arabidopsis thaliana
tobacco nectarin NEC3 is expressed in nectaries and a few other floral tissues Nicotiana langsdorffii × Nicotiana sanderae var. L×S8; Nicotiana tabacum
GFP fluorescence was observed in region behind the root tip Hordeum vulgare
OeACS2 is found at highest level in leaf and flower tissue in ARB
OeERS1 is expressed differentially within and between fruit abscission zone–adjacent cells of two cultivars
GUS signal could hardly be detected in leaves Oryza sativa
bHLH6 is expressed in leaf mesophyll cells Oryza sativa
ZmYS1 expression in crown and seminal roots is lower than in leaf blades Zea mays
G-box mutation causes decreased expression in aerial parts Arabidopsis thaliana
(ATCYTC-A, CYTC-1, AT1G22840) and (CYTC-2, AT4G10040) promoters display different expression patterns Arabidopsis thaliana
bHLH6pro::GUS transgenic plants show bHLH6 expression in spikelets Oryza sativa
(ABA1, ATABA1, ATZEP, IBS3, LOS6, NPQ2, ZEP, AT5G67030) expression in roots is lowest in roots Capsicum annuum
transgenic rice lines harboring the OsTOD1j::OsTOD1jg-GUS transgene showed strong β-glucuronidase (GUS) signals in pollen grains Oryza sativa
Zm00001d052047 is highly expressed in pollen in the background of (B73, CHL6, CNX, CNX1, SIR4, AT5G20990) Zea mays
buds showed highest expression of F3′H Cosmos sulphureus
RNase Phy4 is also highly expressed in petals Petunia hybrida
OsCc1 promoter is highly active in reproductive tissues Oryza sativa
(ATCNGC19, CNGC19, AT3G17690) is expressed in phloem Arabidopsis thaliana
Northern blot analysis showed TaCAD1 transcript was most abundant in stem tissues Triticum aestivum
pollen grains show no GUS staining Arabidopsis thaliana
transcripts of putative VvRop- and VvRab-interacting proteins were found to be expressed in various organs Vitis vinifera
RNase Phy5 is mostly expressed in styles Petunia hybrida
weak GUS activity was also found in flowers of transgenic plants Oryza sativa
OsNRT2.4 was expressed mainly in leaves Oryza sativa
BjCET3 and BjCET4 accumulate relatively more in the root than the other tissues Brassica juncea
NaHD20 mRNA shows highest levels in corolla, sepals, and stamens Nicotiana attenuata
some PR-10 gene members are constitutively expressed in defined tissues
OsPUB65 is expressed only in calli tissue Oryza sativa
RNase Phy1 expression seems higher in floral organs than in vegetative tissues Petunia hybrida
GFP fluorescence was observed in roots of barley grown in hydroponics Hordeum vulgare
GluB-5 and (BGLU25, GLUC, AT3G03640) promoters directed GUS expression in whole mature endosperm Oryza sativa
bHLH6pro::GUS transgenic plants show bHLH6 expression in leaves Oryza sativa
three VvRabGDIs were not detected in berry tissues Vitis vinifera
RNase Phy3 and RNase Phy4 have patterns consistent with nectarins Petunia hybrida
S-RNases are expressed mainly in pistil
tissue specialization could be associated with transcript profiles Citrus clementina
(PGD1, AT1G64190) promoter is particularly active in flowers Oryza sativa
HCC1:GUS transgenic plants show GUS expression in cotyledon primordia Arabidopsis thaliana
OUTER CELL LAYER1 (OCL1) is expressed in endosperm epidermis Zea mays
RNase Phy5 shows weak expression in petals, stamens (anthers), and ovaries Petunia hybrida
all class A ssDETDFs were present in all organs analysed of apomictic plants Paspalum simplex
AtACBP1pro::GUS transgenic line is expressed in cortex Arabidopsis thaliana
(AGP1, ATAGP1, AT5G64310) promoter drives strong GFP expression in chalazal region of ovules Arabidopsis thaliana
GUS staining of pPROAtCAPE1:GUS transgenic lines reflected mRNA expression pattern in shoots and roots shown by qRT-PCR Arabidopsis thaliana
transgenic rice lines harboring the OsTOD1j::OsTOD1jg-GUS transgene showed strong β-glucuronidase (GUS) signals in pollen tubes Oryza sativa
novel TE insertion may change tissue-specific patterns of expression
R1G1B promoter is active in endosperm Oryza sativa
HCC1:GUS transgenic plants show GUS expression in funicular attachment site of ovules Arabidopsis thaliana
MtNoa1/ (ATNOA1, ATNOS1, NOA1, NOS1, RIF1, SVR10, AT3G47450) promoter activity was detected mainly in vascular bundles Medicago truncatula
HT-M3 is rare or absent in SC N. plumbaginifolia pistils Nicotiana plumbaginifolia
VvRabGEF1 was expressed in wide diversity of organs Vitis vinifera
NtIRT1 transcript was detected in all root samples Nicotiana tabacum
glucose 6-phosphate (Glc6P)/phosphate translocator (GPT) is preferentially expressed in non-green tissues
MtNOA1/ (ATNOA1, ATNOS1, NOA1, NOS1, RIF1, SVR10, AT3G47450) is expressed more in Medicago truncatula leaves Medicago truncatula
uncoupling protein 1 (ATPUMP1, ATUCP1, PUMP1, UCP, UCP1, AT3G54110) expression level is similar between root and shoot tissues Arabidopsis thaliana
GUS activity was not observed in flower petals Solanum lycopersicum
SiAREB1 and SiAREB2 highly expressed in leaf tissue Setaria italica
OsNRAMP5 shows high expression levels in plumules and young shoots Oryza sativa
OsNRAMP5 shows little or no expression in endosperm Oryza sativa
OsCc1 promoter is highly active in vegetative tissues Oryza sativa
OeACO2 is not fruit abscission zone specific
OeACO2 transcripts are more abundant in flower and fruit tissue
OeEIL2 is expressed differentially within and between fruit abscission zone–adjacent cells of two cultivars
VvRabGEF1 transcripts were expressed in wide diversity of organs Vitis vinifera
putative Rop- and Rab-GAP-, GEF-, and GDI-interacting proteins were generally not restricted to specific tissues
Expression in stems was higher than in roots and shoot apices Dendranthema grandiflorum
DgCCD8b was detected only in stem and root tissues Dendranthema grandiflorum
GUS staining showed OsNRT2.4 was specially expressed in base of lateral root primodia Oryza sativa
OeERS1 is not fruit abscission zone specific
lcy-β1 and lcy-β2 genes were measured in Tainung and Hybrid 1B leaves, flowers and fruit Carica papaya
17-bp signatures from 18 libraries represent 12 different tissues/organs Oryza sativa
three VvRabGDIs was not expressed in berry tissues Vitis vinifera
DgCCD8b was not detected in shoot apices Dendranthema grandiflorum
transverse section through the root showed fluorescence in all cell layers Hordeum vulgare
(AAc1, ACT1, AT2G37620) promoter is highly active in reproductive tissues Oryza sativa
pyruvate,orthophosphate dikinase (PPDK, AT4G15530) is only moderately expressed in mature leaves
OeACS2 is expressed at low level in shoot tissue
MtNoa1/ (ATNOA1, ATNOS1, NOA1, NOS1, RIF1, SVR10, AT3G47450) expression occurs in vascular tissues Medicago truncatula
rice allergenic RAG-1 promoter is expressed in inner starchy endosperm Oryza sativa
ZmYS1 expression in crown and seminal roots is similar crown and seminal roots Zea mays
lcy-β1 and lcy-β2 genes are expressed in yellow fruit
OsNAR2.1 expression included the same tissue types as OsNRT2.1, OsNRT2.2, and OsNRT2.3 expression Oryza sativa
HT-M1 is rare or absent in SC N. plumbaginifolia pistils Nicotiana plumbaginifolia
putative (MIR159, MIR159A, AT1G73687) target genes expressed throughout the root may not show a change in steady-state mRNA levels when whole roots are assayed Arabidopsis thaliana
GFP fluorescence was observed in newly emerged lateral roots Hordeum vulgare
(PGD1, AT1G64190) promoter is particularly active in mature roots Oryza sativa
HCC1:GUS transgenic plants show GUS expression in vascular tissue Arabidopsis thaliana
expression of type I HD-Zip genes is specific to different tissues and organs of the plant
OsCEST is detected at high levels in leaf tissues Oryza sativa
rice glutelin is expressed exclusively in endosperm Oryza sativa
ZmCKX10 transcript levels are highest in tassels and silks Zea mays
OsNRT2.2 was strongly expressed not only in roots, but also in caryopsis Oryza sativa
HCC1:GUS transgenic plants show GUS expression in guard cells Arabidopsis thaliana
bHLH6 expression is higher in leaves than in stem bases Oryza sativa
PtoPIN3a only expressed in leaves Populus tomentosa
(AGP1, ATAGP1, AT5G64310) was selected for further analysis based on presence of transcripts in pistil tissues and absence in stamen tissues Arabidopsis thaliana
(AGP23, ATAGP23, AT3G57690) is downregulated in pistil tissues compared with pollen Arabidopsis thaliana
HvALMT1 promoter::GFP fusion in transgenic barley leaves showed strong GFP fluorescence specifically in guard cells of stomata Hordeum vulgare
BjCET3 and BjCET4 accumulation pattern is similar to (ATMTP3, ATMTPA2, MTP3, MTPA2, AT3G58810) transcript abundance Brassica juncea; Arabidopsis thaliana
(AtCEST, CEST, Y3IP1, AT5G44650) is expressed in rosette and cauline leaves and flowers Arabidopsis thaliana
CAN24 is expressed 1600-fold higher in glands compared to leaves Cannabis sativa
rice allergenic Glb-1 promoter is expressed in inner starchy endosperm Oryza sativa
site II elements are required for maximal expression mainly in reproductive tissues Arabidopsis thaliana
rice U-box protein genes are expressed in flower tissue Oryza sativa
(AGP9, AT2G14890) was selected for further analysis based on presence of transcripts in pistil tissues and absence in stamen tissues Arabidopsis thaliana
(AGP15, ATAGP15, AT5G11740) is downregulated in seedlings Arabidopsis thaliana
SiARDP transcript levels lower in inflorescence Setaria italica
OsNRAMP5 shows enrichment in vascular bundles Oryza sativa
GL3::SCM-GFP construct drives SCM-GFP expression in differentiating hair cells Arabidopsis thaliana
(LGO, SMR1, AT3G10525) gene expression occurs in epidermal and mesophyll cell layers Arabidopsis thaliana
ZmXTH1 mRNA in hydroponic conditions mainly accumulates in leaves Zea mays
ZmCKX1 expression is almost undetectable in young leaves Zea mays
ZmCKX1 expression is predominant in developing kernel and reproductive organs Zea mays
JEKYLL is transfer cell-specific gene Hordeum vulgare
Ntann12 is principally expressed in roots Nicotiana tabacum
ZmXTH5 expressed preferentially in leaves Zea mays
ZmYS1 is expressed in shoots Zea mays
GluA-3 promoter expression pattern was similar to previously reported GluA-3 promoter expression pattern Oryza sativa
ZmXTH1 mRNA in soil-grown plants accumulates predominantly in roots Zea mays
ZmYS1 almost no expression detected in hypocotyl Zea mays
ZmCKX10 transcript accumulation is exception in embryo and endosperm Zea mays
PwTUA1 is not detected in needles Picea wilsonii
PwTUA1 is not detected in stems Picea wilsonii
OsCEST is detected at moderate levels in flowers Oryza sativa
rice U-box protein genes are expressed in root tissue Oryza sativa
PpSFBB 4-u1–u4 and PpSFBB 4-d1–d2 were all specifically expressed in pollen, but not in pistils or leaves Pyrus pyrifolia
OsNRAMP5 shows highest GUS activity in stele and sclerenchyma layer cells of roots Oryza sativa
PtoPIN8a and 8b highly transcribed in catkins and pollen Populus tomentosa
(ANU10, AT1G28530) gene is expressed in roots Arabidopsis thaliana
(AGP10, ATAGP10, AT4G09030) shows higher level of overexpression in pistils compared with pollen Arabidopsis thaliana
OsNRAMP5 shows strong expression in hulls Oryza sativa
GluA subfamily gene promoters (GluA-1, GluA-2, and GluA-3) were specific to outer endosperm Oryza sativa
(AGP1, ATAGP1, AT5G64310) was selected for further analyses upregulated AGP group Arabidopsis thaliana
(AGP12, ATAGP12, AT3G13520) promoter shows very weak GFP expression along internal tissues of funiculus and septum Arabidopsis thaliana
tissue-specific differentiation of gene expression relates to DNA methylation
(AtCEST, CEST, Y3IP1, AT5G44650) expression is at higher level than that at roots Arabidopsis thaliana
other two genes encoding the same subunit are expressed in vegetative tissues Arabidopsis thaliana
lcy-β2 gene is expressed at much higher level in yellow fruit
OeEIL2 shows high expression level in leaf tissue
rice U-box protein genes are expressed in calli tissue Oryza sativa
β2 transcript level in red papaya fruit is reduced red papaya fruit
tobacco nectarins (NEC1, NEC4, NEC5) are expressed exclusively in nectaries that are actively secreting nectar Nicotiana langsdorffii × Nicotiana sanderae var. L×S8; Nicotiana tabacum
rice 26 kDa globulin (Glb-1) promoter is only inner endosperm-specific promoter Oryza sativa
ZmYS1 expression is much lower in leaf sheaths Zea mays
mitochondrial proteins show preferential expression in anthers and roots
OsMTP1 shows lower expression in endosperm Oryza sativa
(NRT1.12, AT3G16180) is expressed in both shoot and root Arabidopsis thaliana
OsHMA3 expression is high in root hair Oryza sativa
SlSKOR expression was higher in stele than in cortex Solanum lycopersicum
miR4407 expression is highest in stems Glycine max
weaker GUS activity was detected in anthers and glumes Oryza sativa
ZmPRP transcripts were found in xylem in the root maturation region Zea mays
FaMYB10 shows negligible expression levels in vegetative tissues (leaves, crowns, roots, runners) Fragaria × ananassa
GUS activity was not detected in seedlings, roots, stems, and leaves Solanum lycopersicum
pAGP23:GUS fusion-expressing plants show GUS activity in pollen tubes Arabidopsis thaliana
(AGP9, AT2G14890) is upregulated in pistil Arabidopsis thaliana
both pAG23:GUS and pAGP23:NLS:3GFP reporters were detected in pollen Arabidopsis thaliana
PpSFBB 2-u1–u5 and PpSFBB 2-d1–d5 were all specifically expressed in pollen, but not in pistils or leaves Pyrus pyrifolia
TcGDS transcripts have lower levels in disk flowers and leaves Tanacetum cinerariifolium
GDS promoter activity is primarily localized in parenchyma cells surrounding vascular bundles of stem Chrysanthemum morifolium
(AtNPF1.2, NPF1.2, NRT1.11, AT1G52190) expression levels in shoot are about 4-fold higher than (NRT1.12, AT3G16180) expression levels in shoot Arabidopsis thaliana
two genes orthologous to (ALMT9, AtALMT9, AT3G18440) (Aco003023.1 and Aco010725.1) were most highly expressed members of ALMT gene family in green tissue Ananas comosus
allelic expression difference between (ATSS1, SS1, AT5G24300) and (ATNS1, NS1, OVA8, AT4G17300) alleles was observed in immature ear tissue Zea mays
(AGP12, ATAGP12, AT3G13520) was selected for further analysis based on presence of transcripts in pistil tissues and absence in stamen tissues Arabidopsis thaliana
OsNRAMP5 shows GUS activity in vascular tissues of hulls Oryza sativa
OsNRAMP5 is also detected in elongation zone of roots Oryza sativa
HvGS1_2 is more highly expressed in leaf Hordeum vulgare
HvRAF transcripts is more abundant in roots Hordeum vulgare
(AtEND1, END1, AT1G32280) promoter is seed and pollen specific Arabidopsis thaliana
PtoPIN3b, 5b, and 5c enriched in leaves Populus tomentosa
(AGP7, AT5G65390) is downregulated in pistil tissues compared with pollen Arabidopsis thaliana
OsNRAMP5 shows higher expression in older leaves Oryza sativa
PtoPIN1c, PtoPIN2, and PtoPIN5a only expressed in roots Populus tomentosa
(AGP9, AT2G14890) promoter leads to GFP expression in funiculus Arabidopsis thaliana
46 selected PtrWRKY genes are expressed in roots, stems, and leaves Populus trichocarpa
BnaGLN1.2 gene is more expressed in leaf blades than in stems Brassica napus
(AGP9, AT2G14890) is downregulated in seedlings Arabidopsis thaliana
SiARDP transcript levels lower in root Setaria italica
OsNRAMP5 shows clearly higher expression in unexpanded part of the fourth leaf Oryza sativa
OsNRAMP5 is mainly detected in maturation zone of roots Oryza sativa
(AGP9, AT2G14890) promoter exhibits very weak GFP expression in chalazal pole of ovules Arabidopsis thaliana
FISH technique were performed with whole organs Arabidopsis thaliana
HvGS1_1 is more highly expressed in stem Hordeum vulgare
(ATCSP3, CSP3, AT2G17870) has very low levels of expression relative to (ATCSP2, CSDP2, CSP2, GRP2, AT4G38680) and (ATCSP4, ATGRP2B, GRP2B, AT2G21060) Arabidopsis thaliana
AtCSP homologues exhibit similar gene expression pattern except (AtCSP1, CSDP1, CSP1, AT4G36020) Arabidopsis thaliana
(GBF3, AT2G46270) is preferentially expressed in stamens at the F 12 stage and in mature pollen Arabidopsis thaliana
two transcription factors were found to be preferentially expressed in glands Cannabis sativa
(AGP9, AT2G14890) promoter leads to GFP expression in vascular tissues of pistil transmitting tract Arabidopsis thaliana
expression in flowers and siliques is lower Arabidopsis thaliana
(AGP12, ATAGP12, AT3G13520) promoter guides strong GFP expression to chalazal pole of ovules Arabidopsis thaliana
(AGP15, ATAGP15, AT5G11740) is upregulated in pistil Arabidopsis thaliana
OsNRAMP5 is moderately expressed in expanded leaves Oryza sativa
allelic expression difference between (ATSS1, SS1, AT5G24300) and (ATNS1, NS1, OVA8, AT4G17300) alleles was observed in seedling tissue Zea mays
WER::SCM-GFP construct expresses SCM-GFP in epidermis tissue Arabidopsis thaliana
alternative oxidase 1d (AOX1D, AT1G32350) transcript level is not enhanced in shoot of (AOX1A, ATAOX1A, AtHSR3, HSR3, AT3G22370) mutants Arabidopsis thaliana
AtACBP1pro::GUS expression is more abundant in stem epidermis than in leaf epidermis Arabidopsis thaliana
Seven PtoPINs (PtoPIN1a, 1b, 1d, 3b, 5c, 8a, and 8b) ubiquitously expressed all tissues Populus tomentosa
FT expression is higher in buds than leaves Citrus
AtPDF2.6 is mainly expressed in root xylem parenchyma cells Arabidopsis thaliana
(ATHSGBP, ATRAB11B, ATRABA1D, RABA1d, AT4G18800) is expressed high in stele Arabidopsis thaliana
ZmNF-Y16 was not expressed in different maize tissues Zea mays
clusters 24 and 31 show high levels of expression in green segments Ananas comosus
(VQ20, AT3G18360) is specifically expressed in anthers Arabidopsis thaliana
GUS expression directed by 1.6 kb GluD-1 promoter occurs in inner starchy endosperm Oryza sativa
site II elements act to enhance expression levels mainly in reproductive organs Arabidopsis thaliana
HvGS1_3 is more highly expressed in grain Hordeum vulgare
J0121 enhancer trap line drives gene transcription in all xylem parenchyma (XPP) cells from elongation zone upward Arabidopsis thaliana
J0634 enhancer trap line drives gene transcription in epidermis starting at beginning of differentiation zone Arabidopsis thaliana
ZAR7 is mainly expressed in root tissue Zea mays
(AGP23, ATAGP23, AT3G57690) is highly downregulated in seedlings Arabidopsis thaliana
HvGS1_2 is more highly expressed in root Hordeum vulgare
five peroxidases are expressed mainly in roots Arabidopsis thaliana
polygalacturonases have expression absent in other tissues Oryza sativa
(ZAR1, AT3G50950) showed highest expression in root and pericarp tissues Zea mays
OsNRAMP5 shows moderate expression level in stems at the heading stage Oryza sativa
BdCSLF6 is expressed at low levels in mature leaf Brachypodium distachyon
other genes are also expressed in the same tissue Oryza sativa
polygalacturonases have eight loci with ESTs displaying >6 (AIRP3, AtAIRP3, LOG2, AT3G09770) higher expression than in seedlings Oryza sativa
ZmRCAα and ZmRCAβ transcripts accumulated primarily in leaves Zea mays
pBdTHX1::GUS shows GUS staining in parenchyma cells Brachypodium distachyon
(ATMSRB6, MSRB6, AT4G04840) is preferentially expressed in leaves and other green organs Arabidopsis thaliana
StPPI1 expression is higher in leaves Solanum tuberosum L.
Aco011916.1 and Aco015779.1 are highly expressed in green tissue Ananas comosus
(AGP1, ATAGP1, AT5G64310) promoter drives strong GFP expression in funiculus Arabidopsis thaliana
SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 7 (ATSPL7, SPL7, AT5G18830) expression shows a relative peak in pollen Arabidopsis thaliana
GmIPT3 is mainly expressed in root Glycine max
GmIPT3 expression is highest in roots Glycine max
miR4407 is found in all tissues tested Glycine max
PtrMYB6 transcripts are more abundant in all tissues tested than PtrMYB126 transcripts Populus trichocarpa
lncRNAs in cluster I highly or specifically expressed in at least one embryo tissue Ricinus communis
organ exhibits transcriptome specificities Glycine max; Arabidopsis thaliana; Solanum lycopersicum
OSR flowering time genes show apex-specific expression apex tissue Brassica napus
ChCAD4 (XP_010519292.1) was expressed in both seed coat and stem Cleome
tissue marker genes provided consistent results tissue-specific expression patterns
BdTHX1 promoter expression pattern is similar to BdTHX1 expression profile Brachypodium distachyon
(AGP10, ATAGP10, AT4G09030) was selected for further analysis based on presence of transcripts in pistil tissues and absence in stamen tissues Arabidopsis thaliana
(AGP1, ATAGP1, AT5G64310) transcripts were not detected in stigmatic cells Arabidopsis thaliana
(B73, CHL6, CNX, CNX1, SIR4, AT5G20990) allele of Tsh is favored in ear tissues Zea mays
SHR::SCM-GFP line generates stele-specific SCM-GFP Arabidopsis thaliana
GUS staining in (ATLOX6, LOX6, AT1G67560) pro:ACA10-GUS was intense in xylem regions
different (ATGSTU24, GST, GSTU24, AT1G17170) isoenzymes are expressed in different tissues Zea mays
HlALMT1 expression in outer tissues of root tips is higher than HlALMT1 expression in inner tissues of root tips Holcus lanatus
46 co-expression clusters in white tissues have positively correlated co-expression in white tissues and no correlated expression in green tissues Ananas comosus
(ATAIG1, BHLH32, TMO5, AT3G25710) promoter directs expression in developing xylem cells Arabidopsis thaliana
PAL genes exhibited highest transcript levels in fibers Cleome
RIM-CR transcription factors show higher expression in ovules than in anthers Arabidopsis thaliana
GL2:GUS seedlings show GUS staining in defined cell files of growth region at root tip Arabidopsis thaliana
MtNoa1/ (ATNOA1, ATNOS1, NOA1, NOS1, RIF1, SVR10, AT3G47450) promoter activity was not observed in nitrogen-fixing zone Medicago truncatula
PwTUA1 is not detected in roots Picea wilsonii
(CLE45, AT1G69588) was preferentially expressed in stigma in the pistil at 22°C Arabidopsis thaliana
expression dominance could be observed in a given tissue in allotetraploid cotton
G235 line shows H2B-GFP beginning to accumulate at transition domain Arabidopsis thaliana
anthocyanin fluorescence is exclusively localised to cells with yellow fluorescent nuclei Arabidopsis thaliana
some glossy genes was detected beyond tissues where (GL3, MYC6.2, AT5G41315) is expressed
V241 line shows H2B-Venus fluorescence in one–two immediate progeny of lateral root cap stem cells Arabidopsis thaliana
QC46 and mAGL42 promoters failed to produce expression specific to QC cells beyond 4 days after germination Arabidopsis thaliana
maize Glossy genes are largely inactive in seeds and roots Zea mays
2-week-old plants showed no GUS signals in hypocotyl and upper part of primary root Arabidopsis thaliana
DOF proteins contribute to control of tissue-specific gene expression
OsNRAMP5 is highly expressed in roots Oryza sativa
OsNRAMP5 shows GUS activity in all cell types in maturation region of root Oryza sativa
Ghd7 expression is virtually absent in other tissues and preemerged immature leaf blade Oryza sativa
(ATNCED6, NCED6, AT3G24220) is highly expressed in testa Arabidopsis thaliana
TcADH1, TcADH2, TcALDH1, TcCDS, and TcGLIP transcripts are significantly more abundant in floral tissues Tanacetum cinerariifolium
pBdTHX1::GUS shows strong GUS staining throughout endosperm tissue Brachypodium distachyon
(AQC1, HPS7, TPST, AT1G08030) promoter directs expression in quiescent centre cells Arabidopsis thaliana
(GL3, MYC6.2, AT5G41315) was silenced in roots
(MIR400, AT1G32582) and (AT1G32583) expression is strongest in siliques Arabidopsis thaliana
Tsh demonstrates genotype- and tissue-specific effects on allelic expression Zea mays
apical meristem (AM) had more different transcripts and genes expressed only in this tissue Pinus pinaster
miR4407pro-GUS signal is localized in pericycle and inner cortex Glycine max
OsHMGB1 expression is relatively higher in leaves of 4-wk-old seedlings Oryza sativa
OsMTP1 is primarily expressed in root tip and lateral roots Oryza sativa
ZmRCAα transcripts accumulate to higher levels in leaves than in other tissues Zea mays
pBdTHX1::GUS shows GUS staining in immature vascular bundles Brachypodium distachyon
(ATMSRA2, MRSA2, PMSR2, AT5G07460) is more specifically expressed in roots Arabidopsis thaliana
GhnsLTPsA10 which was predominantly expressed in pathogen-infected roots Gossypium hirsutum
OsMTP1 level in roots is significantly higher in (HAP1, MAGO, MEE63, AT1G02140) accessions Oryza sativa
OsHMA5 is detected only in central cylinder of roots (pericycle and inner tissues) Oryza sativa
(CLEL 9, GLV2, RGF9, AT5G64770) promoter drives expression of (MIR399, MIR399F, AT2G34208) Arabidopsis thaliana
(PIP2;5, PIP2D, AT3G54820) exhibited high and specific expression in epidermal (L1) cells Arabidopsis thaliana
GUS signals are detected uniquely in leaf vascular bundles Oryza sativa
(AtNPF1.2, NPF1.2, NRT1.11, AT1G52190) pro:GUS transgenic plants showed GUS staining mainly in major veins Arabidopsis thaliana
(NRT1.12, AT3G16180) expression levels in petiole and midrib are approximately 4 times higher than (NRT1.12, AT3G16180) expression levels in lamina Arabidopsis thaliana
parsley UBI (ubiquitin) promoter allows the expression of transgenes in buds, roots, stems, flowers, and seeds Arabidopsis thaliana
BpMADS11 is expressed at lowest level in mature stems Betula pendula
(AtNPF1.2, NPF1.2, NRT1.11, AT1G52190) expression levels in petiole and midrib are approximately 30 times higher than (AtNPF1.2, NPF1.2, NRT1.11, AT1G52190) expression levels in lamina Arabidopsis thaliana
tissue-specific expression of DT-A in GLABRA2-positive cells was used to test specificity in atrichoblast file of epidermis Arabidopsis thaliana
OsOSC10 exhibited high-expression level in lemma and palea Oryza sativa
BpMADS11 is expressed in young leaves Betula pendula
OsMTP1 is primarily expressed in roots, aleurone and embryo Oryza sativa
OsGlb-1 is primarily expressed in endosperm Oryza sativa
genes involved in various biological processes were found to be specifically expressed in different tissues Cicer arietinum
single gene representing B (nucleotide-binding) subunit of V-ATPase (Aco015226.1) was among most highly expressed transcripts in green CAM-performing sections of pineapple leaf Ananas comosus
group of genes with ubiquitous expression have high expression in at least one tissue Pinus pinaster
XhABI5A was expressed at very low levels in leaf desiccation series Xerophyta humilis
(RAE1, AT5G01720) homolog 1 (RAH1, AT5G27920) is preferentially expressed in root caps and vascular tissues Arabidopsis thaliana
XhFUS3 and XhLEC2 transcripts had normalised read counts in leaves extremely low (mean count < 6) across all RWCs Xerophyta humilis
SlSKOR is preferentially expressed in root stele Solanum lycopersicum
Aco005379.1 is highly expressed in green tissue Ananas comosus
GUS staining in fully unfolded leaves was mainly restricted to petiolule and major veins of each leaflet Lotus japonicus
(DHFR-TS3, DRTS3, AT2G21550) is specifically expressed in meristematic cells of the shoot apex Arabidopsis thaliana
guard cell data set produced by Wang et al. shared only 359 guard cell-enriched transcripts with Yang et al. Arabidopsis thaliana
CHS7 and CHS8 genes show overall expression pattern that varied in different tissues
(B73, CHL6, CNX, CNX1, SIR4, AT5G20990) Ptf allele is always higher in leaves Zea mays
GRMZM2G104789 (AtMYB36, MYB36, AT5G57620) was induced in roots
StPPI1 expression is higher in proliferative regions (shoot apex and flower buds) Solanum tuberosum L.
several laccases show apparent redundancy of gene expression patterns across wide variety of tissues, lignified and non-lignified Arabidopsis thaliana
regulatory genes usually have localized expression Pinus pinaster
343 lncRNAs with fourfold or greater transcription levels in endosperm compared with embryo identified endosperm-preferred lncRNAs Ricinus communis
V311 line expression is expressed in pericycle layer Arabidopsis thaliana
ChCCR1 has high expression in the seed coat Cleome
Arabidopsis thaliana Acyl-CoA-Binding Protein 1 (ACBP, ACBP1, AtACBP1, AT5G53470) is highly expressed in top and bottom of stems Arabidopsis thaliana
(AGP4, ATAGP4, JAGGER, AT5G10430) was selected for further analysis based on presence of transcripts in pistil tissues and absence in stamen tissues Arabidopsis thaliana
(AGP26, ATAGP26, AT2G47930) is upregulated in pistils compared with pollen Arabidopsis thaliana
(AtRABA1e, RABA1e, AT4G18430) is mainly expressed in roots Arabidopsis thaliana
(LAC7, AT3G09220) is uniquely expressed in hydathodes and root hairs Arabidopsis thaliana
each subunit of membrane-integral sector of V-ATPase has higher expression in green tissues than white leaf base Ananas comosus
(FLZ10, AT5G11460) promoter:GUS reporter line shows most activity in stelar region of the shoot and root Arabidopsis thaliana
GUS activity was detected in root epidermis, cortex, stele, root cap Oryza sativa
OsMTP1 is expressed in basal stem Oryza sativa
OsMTP1 is expressed in leaf blade Oryza sativa
ARABIDOPSIS PROFILIN 2 (AtPRF2, PFN2, PRF2, PRO2, AT4G29350) is expressed in vegetative tissues Arabidopsis thaliana
tissue type is more important to allelic variability Zea mays
ZmNF-YC17 was not expressed in different maize tissues Zea mays
highest expressed copy of nine glycolysis and gluconeogenesis enzymes shows stronger expression in photosynthetic green tissue (segments 4–6) than non-photosynthetic white base (segments 1–3) Ananas comosus
highest expressed copy of glucose-6-phosphate 1-epimerase, phosphoglucomutase, and UTP-glucose-1-phosphate uridylyltransferase shows strong diurnal expression with expression mainly in green leaf segments (segment 4–6) Ananas comosus
actualization of the database comprises gene expression localization Pinus pinaster
all three TaNAC77 homoeologs were preferentially expressed in endosperm of Chinese Spring Triticum aestivum
genetic background may influence tissue specificity of expression bias Zea mays
increasing (AtSWEET17, SWEET17, AT4G15920) expression towards leaf tip is also observed in rice and maize leaves based on leaf segment RNA-seq data Oryza sativa; Zea mays
expression of these kinds of transcripts is not generalized across tissues Pinus pinaster
(ATNCED6, NCED6, AT3G24220) is highly expressed in endosperm Arabidopsis thaliana
BdTHX1 and BdCSLF6 have nearly equal expression in elongating internodes and endosperm tissues Brachypodium distachyon
(AXS2, AT1G08200) shows higher expression in roots and dark-grown seedlings Arabidopsis thaliana
endosperm samples had the lowest number of genes expressed (17,323 on average) Zea mays
(MIR395, MIR395F, AT1G69797) levels are lower in leaves, panicles, and culms Oryza sativa
Q-5A predominantly expressed in developing spikes Triticum aestivum
V251 line shows H2B-Venus accumulation in cortical layer of root apical meristem Arabidopsis thaliana
V151 line shows fluorescent protein accumulation in pericycle layer Arabidopsis thaliana
glossy genes and photosynthesis-related genes were typically expressed at higher levels in young or newly emerged leaves across vegetative stages, leaf bases, silks, meiotic tassels, and anthers Zea mays
S. foetida homolog showed preferential expression in seed tissue Steculia foetida
(AST68, SULTR2;1, AT5G10180) was expressed at similar levels in VN and VS
KINASE-INDEPENDENT 17 (AtKIN17, KIN17, AT1G55460) is not expressed in main part of the root Arabidopsis thaliana
xylem parenchyma is one of the sites of SULTR2;1 expression
pEPP : CKX2-72 line shows no expression in shoot tissue Hordeum vulgare
pBdTHX1::GUS is expressed in young leaves Brachypodium distachyon
HvTDF1 expression was rarely detected in later stages and not in other organs assessed Hordeum vulgare
(ATMSRB8, MSRB8, AT4G21840) is more specifically expressed in roots Arabidopsis thaliana
Ghd7 expression is mainly detected in emerged leaf blade Oryza sativa
28 gene co-expression clusters with positive co-expression in green tissue show no correlated expression in white tissue Ananas comosus
two of these genes were also expressed in rm Pinus pinaster
(FLZ6, AT1G78020) promoter:GUS reporter line shows no activity in roots Arabidopsis thaliana
(ACP4, AtACP4, AT4G25050) is specifically present in leaf tissue Arabidopsis thaliana
ZmRCAα and ZmRCAβ transcripts accumulated to lesser extent in stems, tassel spikelets, and immature ears Zea mays
BdCSLF6 is highly expressed in elongating leaves Brachypodium distachyon
GUS product shows no accumulation in pavement cells Arabidopsis thaliana
BdCSLF6 is expressed at low levels in older stem tissues Brachypodium distachyon
BdXTH8 and BdTHX2 have higher expression in elongating internodes and elongating leaf tissue Brachypodium distachyon
duplicated genes appeared to be expressed in different tissues Oryza sativa
genes altered in expression in young and mature (MEX1, RCP1, AT5G17520) leaves were only a small proportion
expression of three aquaporin genes in Physcomitrella patens is restricted to gametophore tissue Physcomitrella patens
LOC_Os04g45180 suggests wide sporophytic expression Oryza sativa
(ATMSRB5, MSRB5, AT4G04830) is more specifically expressed in roots Arabidopsis thaliana
mesophyll marker gene expression indicated that mesophyll/epidermis mRNA constituted a major part of total mRNA in MN and VN
(ATMSRB9, MSRB9, AT4G21850) is more specifically expressed in roots Arabidopsis thaliana
OsABCG18 is expressed in phloem and xylem cells of stems and leaf midribs Oryza sativa
(DHFR-TS3, DRTS3, AT2G21550) is specifically expressed in columella and lateral root cap Arabidopsis thaliana
bHLH6 expression is higher in leaves Oryza sativa
S. foetida homolog had 27 occurrences in leaf tissue Steculia foetida
ProOsMTP1:GFP transgenic line shows strong GFP signal in primary root tip Oryza sativa
V241 line marks most of stem cells surrounding stem cell niche Arabidopsis thaliana
PHS9 gene is specifically expressed in embryo Oryza sativa
BnaA09.GSL5 and BnaC09.GSL5 had highest expression levels in the root tissues Brassica napus
GUS signals were restricted to phloem side of vascular tissues Arabidopsis thaliana
WPRP1 transcripts were detected in rapidly dividing tissues in shoots Triticum aestivum
pollen-expressed pectate lyase loci share sequences that distinguish them from predominantly sporophytically expressed loci Oryza sativa
(FLZ6, AT1G78020) promoter:GUS reporter line shows GUS activity in cotyledons Arabidopsis thaliana
V431 line shows H2B-Venus fluorescence localised to root cap Arabidopsis thaliana
mAGL42 promoter was tested for stem cell niche-specific expression Arabidopsis thaliana
lncRNAs in cluster II specifically expressed in endosperm Ricinus communis
OSR flowering time genes show significantly different pattern of tissue-specific expression from genome-wide level Brassica napus
(AtMYB6, MYB6, AT4G09460) shows higher expression in young leaves Populus tomentosa
expression dominance is not observed at genome-wide level among 35 different tissues in allotetraploid cotton
XP_010522015.1 (ChC4H1) transcript levels were much the highest in stem (fiber) and developing seeds Cleome
TcGDS transcripts are trace in ray florets Tanacetum cinerariifolium
(AtNPF1.2, NPF1.2, NRT1.11, AT1G52190) is mainly expressed in shoot Arabidopsis thaliana
SlSKOR transcript levels were checked in other plant tissues Solanum lycopersicum
(PGA6, WUS, WUS1, AT2G17950) response genes with reduced expression are mainly expressed in leaves Arabidopsis thaliana
lncRNAs in cluster I lowly expressed in endosperm tissue Ricinus communis
11 NLR(-like) genes in the 857-kb MH-I region had lower expression levels in other tissues Oryza sativa
AtHSFA7b is detected in sepals Arabidopsis thaliana
regulatory genes may be activated only in specific tissues Hordeum vulgare
V111 line shows Venus accumulation absent in apical meristem Arabidopsis thaliana
PtrMYB6 is expressed preferentially in leaves and roots Populus trichocarpa
76.69% of the transcribed non-TE genes were expressed throughout the plant, including panicle, leaf, and root Oryza sativa
Co2::SCM-GFP construct produces SCM-GFP in cortex Arabidopsis thaliana
(ACAM-3, CAM3, AT3G56800) could not be detected in floral stocks Arabidopsis thaliana
V251 line shows fluorescence stopping before or at transition domain Arabidopsis thaliana
V431 line shows Venus accumulation in columella cells Arabidopsis thaliana
V201 line shows H2B-Venus accumulation in nuclei of vascular initial cells Arabidopsis thaliana
(DEL1, E2FE, E2L3, AT3G48160) and (APC11, ZGY1, ZYG1, AT3G05870) promoters failed to produce meristem-specific reporter line Arabidopsis thaliana
(COBL9, DER9, MRH4, SHV2, AT5G49270) promoter directs expression in elongating trichoblast cells Arabidopsis thaliana
OSR flowering time genes show leaf-specific expression leaf tissue Brassica napus
VvRabGDI1 was expressed in buds or berries at pre-véraison Vitis vinifera
OsKCH1 expression was found highest in young roots, young leaves, young flowers, and flowers post-pollination Oryza sativa
patterns in young (MEX1, RCP1, AT5G17520) leaves transcriptome were not consistent with patterns in mature (MEX1, RCP1, AT5G17520) leaves transcriptome
VvK1.2 signal was mainly located in nucellus Vitis vinifera