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lateral root development

20849 relationships annotated with this phrase. Showing first 500 of 20849.
Source entity Relationship Target entity Species
MEMBRANE ASSOCIATED KINASE REGULATOR 4 (MAKR4, AT2G39370) mediates founder cell (FC) to lateral root primordium (LRP) transition
auxin defines rate of lateral root (LR) outgrowth
(PUCHI, AT5G18560) is crucial transcription factor
positional cues may be determinant(s) of competence/priming
determinant(s) of competence/priming may not be inherited from the specific cell lineage
auxin conjugating enzymes have roles in lateral root development
SCARECROW (SCR, SGR1, AT3G54220) regulates stem cell niche (SCN) positioning
lateral root primordium (LRP) emergence is mediated by LBD18-EXPANSIN genes ( (ATEXP14, ATEXPA14, ATHEXP ALPHA 1.5, EXP14, EXPA14, AT5G56320) and (ATEXP17, ATEXPA17, ATHEXP ALPHA 1.13, EXP17, EXPA17, AT4G01630) )
WEREWOLF (ATMYB66, MYB66, WER, WER1, AT5G14750) regulates tissue identities
(PUCHI, AT5G18560) is required for restriction of cell division to specific cells during early stages of lateral root primordium formation Arabidopsis thaliana
(ATAZG2, AZG2, AT5G50300) plays a local role in the regulation of lateral root emergence Arabidopsis thaliana
(ATAZG1, AZG1, AT3G10960) expression was absent from lateral root primordia overlaying tissues Arabidopsis thaliana
lateral root primordium (LRP) emergence is mediated by (ASL16, LBD29, AT3G58190) (LAX3, AT1G77690)
GA produced in the endodermis promote lateral root organogenesis Pisum sativum
auxins are required to induce lateral root formation
PLETHORA (PLT) transcription factors regulate positioning and outgrowth of lateral root primordium (LRP)
GmIPT3 is constitutively expressed in lateral primordium Glycine max
LATERAL ORGAN BOUNDARIES DOMAIN17 (ASL15, LBD17, AT2G42440) acts as regulator of lateral root development Arabidopsis thaliana
severe manganese (Mn) deficiency (0 µm Mn) decreases density of first-order lateral roots (1° LR) Arabidopsis thaliana
exogenous application of auxin promotes production of numerous lateral roots Arabidopsis thaliana
the lengths of the growth rate profiles are similar for the different lateral root types of a given species pearl millet; maize
type B lateral roots show difference between species in that median growth rate stays nearly constant up to day 5 in pearl millet whereas it starts to decrease immediately after emergence in maize pearl millet; maize
the convergence of apical diameter toward median apical diameter around 230 μm corresponds to a high proportion of arrested roots maize
Col-0 plants treated with 100 nM NAA resulted in 10-fold increase in lateral roots Arabidopsis thaliana
SHORT-ROOT (EAL1, SGR7, SHR, AT4G37650) regulates tissue identities
LRP morphogenesis and emergence is part of lateral root development
formative periclinal cell divisions of outer layer of stage II lateral root primordia form quiescent center (QC) precursor cells Arabidopsis thaliana
calcium (Ca) deficiency decreases lateral root formation zone in the primary root (LR FZ PR) length Arabidopsis thaliana
chlorine (Cl) deficiency decreases lateral root formation zone in the primary root (LR FZ PR) length Arabidopsis thaliana
frequency of lateral roots (LRs) is dependent on (ATAZG1, AZG1, AT3G10960) Arabidopsis thaliana
(ATAZG2, AZG2, AT5G50300) plays local role in regulation of lateral root emergence
(GATA23, AT5G26930) regulates founder cell (FC) establishment
lateral root (LR) initiation in Arabidopsis is regulated by interplay between (ATUBP14, DA3, PER1, TARANI, TNI, TTN6, UBP14, AT3G20630) (IAA3, SHY2, AT1G04240) (ARF7, BIP, IAA21, IAA23, IAA25, MSG1, NPH4, TIR5, AT5G20730) and (ARF11, ARF19, IAA22, AT1G19220) Arabidopsis thaliana
35S::GFP-AtSYP132 ΔPTM transgenic line showed significantly reduced lateral root (LR) formation Oryza sativa
early tissue identity genes including SHORT-ROOT (EAL1, SGR7, SHR, AT4G37650) SCARECROW (SCR, SGR1, AT3G54220) and WUSCHEL-RELATED HOMEOBOX 5 (WOX5, WOX5B, AT3G11260)
SOMBRERO (SMB) regulates tissue identities
CRISPR-Kill lines cultured on 50 μM inducer halved number of lateral roots compared with approach without Dex-induction Arabidopsis thaliana
induced CRISPR-Kill lines showed dramatic reduction in lateral root number Arabidopsis thaliana
calcium (Ca) deficiency does not affect second-order lateral root (2° LR) density and average length Arabidopsis thaliana
miR4407pro-GUS signal is localized in lateral root primordium Glycine max
LATERAL ORGAN BOUNDARIES DOMAIN18 (LBD18, AT2G45420) acts as regulator of lateral root development Arabidopsis thaliana
moderate phosphorus (P) deficiency (50 µm P) increases density of first-order lateral roots (1° LR) Arabidopsis thaliana
total number of lateral roots (LRs) depends on environmental factors Arabidopsis thaliana
miR4407 is highly expressed during lateral root development Glycine max
results were in line with expectations Arabidopsis thaliana
GmHAD1-2 overexpression lines (OX1 and OX2) increased lateral root number and density in high P levels Glycine max
WUSCHEL-RELATED HOMEOBOX 5 (WOX5, WOX5B, AT3G11260) regulates stem cell niche (SCN) positioning
magnesium (Mg) deficiency does not change significantly density of second-order lateral roots (2° LR) Arabidopsis thaliana
sulfur (S) deficiency does not affect density and average length of second-order lateral roots (2° LR) Arabidopsis thaliana
polarity of PIN proteins in developing lateral roots is potentially regulated by cytokinin-mediated (ATPIN1, PIN1, AT1G73590) degradation
fungal volatiles (e.g. sesquiterpenes by L. bicolor, geosmin by Tricholoma vaccinum) are required to induce lateral root formation Laccaria bicolor; Tricholoma vaccinum
GmHAD1-2 suppression lines (Ri1 and Ri2) decreased lateral root number and density in high P levels Glycine max
integration of systems biology and single-cell transcriptomics provides comprehensive picture of gene regulation mechanisms
boron (B) deficiency increases density of first-order lateral roots (1° LR) Arabidopsis thaliana
downstream genetic networks including late tissue identity genes
pSCR-dependent CRISPR-Kill activity would have impact on lateral root formation Arabidopsis thaliana
HISTIDINE PHOSPHOTRANSFER PROTEIN 6 (AHP6, HP6, AT1G80100) is involved in formation of lateral roots Arabidopsis thaliana
overexpression of genes involved in auxin biosynthesis led to altered number of lateral roots Arabidopsis thaliana
genetic interaction between (ARK2, AtARK2, RK2, AT1G65800) and (ATPUB9, PUB9, AT3G07360) plays functionally redundant role during phosphate starvation Arabidopsis thaliana
variability in the size of different lateral root primordia has been reported in maize Zea mays
AUXIN RESPONSE FACTOR 7/19 ( (ARF7, BIP, IAA21, IAA23, IAA25, MSG1, NPH4, TIR5, AT5G20730) /19) are crucial transcription factors
SHORT-ROOT (EAL1, SGR7, SHR, AT4G37650) regulates stem cell niche (SCN) positioning
differentially expressed genes in pericycle cells are observed prior to lateral root initiation Zea mays
Loss-of-function (ACH1, ATNRT2.1, ATNRT2:1, LIN1, NRT2, NRT2.1, NRT2:1, NRT2;1AT, AT1G08090) mutants display more pronounced lateral root elongation
the higher censoring level for pearl millet compared with maize is a direct consequence of the shorter average growth rate profiles for pearl millet (in relation to the faster root growth in this species) pearl millet; maize
the absence of type A lateral roots is a difference from the control wild type for the shaded plants maize
35S::GFP-OsSYP132 transgenic line had LR-deficient phenotype Oryza sativa
lateral root (LR) formation is complex and highly coordinated process Arabidopsis thaliana
(AQC1, HPS7, TPST, AT1G08030) mutant has first lateral root positioned much closer to root tip Arabidopsis thaliana
(ANAC037, VND1, AT2G18060) (ANAC076, NAC076, VND2, AT4G36160) (ANAC105, NAC105, VND3, AT5G66300) seedlings fail to restore lateral root numbers Arabidopsis thaliana
(OTU5, AT3G62940) overexpression line ( OE) show no difference from wild-type in lateral root number Arabidopsis thaliana
lack of lateral root formation in ark2-1/pub9-1 plants is because of inability to accumulate auxin in root tips under phosphate starvation Arabidopsis thaliana
type C median growth rate reaches zero at day 3 in both species pearl millet; maize
(ARP6, ATARP6, ESD1, SUF3, AT3G33520) plants grown on low-Pi medium show no increase in lateral root number Arabidopsis thaliana
mutation of genes involved in auxin biosynthesis led to altered number of lateral roots Arabidopsis thaliana
(ATPDX1, ATPDX1.3, PDX1, PDX1.3, RSR4, AT5G01410) is highly expressed at site of lateral root emergence Arabidopsis thaliana
(AQC1, HPS7, TPST, AT1G08030) mutant has distance between lateral roots much shorter than wild-type distance between lateral roots Arabidopsis thaliana
wild-type and (AQC1, HPS7, TPST, AT1G08030) mutant develop fewer lateral roots on inorganic phosphate-sufficient medium than on inorganic phosphate-deficient medium Arabidopsis thaliana
wild-type maize plants exposed to severe shading were analyzed for growth rate profiles of lateral roots maize
lateral root defect in ark2-1/pub9-1 double mutants is likely caused by lack of auxin accumulation at lateral root initiation sites Arabidopsis thaliana
GATA TRANSCRIPTION FACTOR23 expression can rescue iaa28-1 lateral root development phenotype Arabidopsis thaliana
apical diameter converges toward median apical diameter around 230 μm maize
stele diameter and central XTE diameter were shown previously to be contrasting among individual roots in pearl millet pearl millet
(ATMAPK6, ATMPK6, MAPK6, MPK6, AT2G43790) mutants showed increased lateral root initiation Arabidopsis thaliana
the higher proportion of type B lateral roots compensated by a lower proportion of type C lateral roots is a difference from the control wild type for the rtcs mutant maize
additional periclinal cell divisions in the endodermal cell layer occur during primordia establishment Oryza sativa
lower sensitivity of (ABI1, AtABI1, AT4G26080) to auxin treatment suggested that (ABI1, AtABI1, AT4G26080) is required for auxin-stimulated lateral root development Arabidopsis thaliana
lateral root (LR) development enables plant adaptation to environmental changes
auxin is key hormone for lateral root (LR) formation Oryza sativa
a growth rate profile is modeled by a single growth phase either censored or followed by a growth arrest pearl millet; maize
stele diameter and central xylem tracheary element (XTE) diameter were measured in pearl millet lateral roots pearl millet
transcription factor (ATWRKY46, WRKY46, AT2G46400) acts upstream of ABI4 to promote lateral root initiation under osmotic/salt conditions via regulation of auxin homeostasis Arabidopsis thaliana
decreased basally localized (ATPIN1, PIN1, AT1G73590) (ATPIN3, PIN3, AT1G70940) (ATPIN4, PIN4, AT2G01420) and (ATPIN7, PIN7, AT1G23080) and slightly increased apically localized (AGR, AGR1, ATPIN2, EIR1, MM31, PIN2, WAV6, AT5G57090) in sHSP22 OX may affect lateral root development Arabidopsis thaliana
Lateral root development 2 plays essential role in repressing lateral root development under osmotic stress lateral root development Arabidopsis thaliana
decrease in (IAA19, MSG2, AT3G15540) and (IAA20, AT2G46990) expression in (NPC3, AT3G03520) may be linked to defect in lateral root density in (NPC3, AT3G03520)
auxin is key instructive signal for lateral root development
lateral root defects in ark2-1/pub9-1 double mutants could be rescued through complementation with (ARK2, AtARK2, RK2, AT1G65800) or (ATPUB9, PUB9, AT3G07360) Arabidopsis thaliana
wild-type seedlings recover lateral root development by transfer to normal light condition Arabidopsis thaliana
the mixing at the later ages within type A class of lateral roots whose growth rate started to decrease with lateral roots whose growth rate continued to increase may be due to the regular increase in mean absolute deviation with root age for type A lateral roots in maize maize
(IAA28, IAR2, AT5G25890) functions as repressor of lateral root development Arabidopsis thaliana
Lateral root formation in gin2-1 seedlings was essentially abolished at all nitrate levels
local auxin accumulation drives lateral root formation Arabidopsis thaliana
daily median growth rates are divergent between the three types of lateral roots pearl millet; maize
type A median growth rate stays positive at all ages in both species pearl millet; maize
lateral roots were assigned to one of the three types defined previously based on their growth rate profiles pearl millet
initiation of lateral roots does not depend on ABCB19-mediated tipward auxin transport Arabidopsis thaliana
(EAL1, SGR7, SHR, AT4G37650) mutant is impaired in lateral root development Arabidopsis thaliana
mpk17-1 pmd1-1 double mutant displayed wild-type sensitivity to auxin precursor IBA in lateral root induction Arabidopsis thaliana
polar auxin transport is principal stimulator of lateral root primordium development and emergence Arabidopsis thaliana
efflux carrier (ATPIN7, PIN7, AT1G23080) is generally down-regulated at site of lateral root primordia Arabidopsis thaliana
growth states are systematically followed by a growth arrest state pearl millet; maize
the estimated growth phase duration distributions are similar for each lateral root type between the rtcs mutant and the wild-type SMS-LM as well as between the shaded and the unshaded SMS-LMs for types B and C maize
boron (B) deficiency does not affect density of second-order lateral roots (2° LR) Arabidopsis thaliana
(ANAC037, VND1, AT2G18060) (ANAC076, NAC076, VND2, AT4G36160) and (ANAC105, NAC105, VND3, AT5G66300) regulate in response to lateral root formation Arabidopsis thaliana
apical diameter profiles do not distinguish type B from type C lateral roots maize
auxin plays role in initiation of lateral roots
(ATXTH19, XTH19, AT4G30290) and (XTH23, XTR6, AT4G25810) play an important role in cell wall modification in lateral root development Arabidopsis thaliana
(ATMPK17, MPK17, AT2G01450) insertional allele displays increased sensitivity to IBA in lateral root induction assays Arabidopsis thaliana
changes in growth rate within a growth phase are modeled by a linear trend pearl millet; maize
different lateral root types can be defined based on their anatomy pearl millet
SOMBRERO (SMB) regulates stem cell niche (SCN) positioning
downstream genetic networks including regulators of lateral root primordium (LRP) establishment
late tissue identity genes including SOMBRERO (SMB) and WEREWOLF (ATMYB66, MYB66, WER, WER1, AT5G14750)
one-third of evaluated plants showed no lateral roots formed Arabidopsis thaliana
most seed plants derive lateral roots from pericycle, cortex and endodermis
Loss-of-function glv6glv10 mutants result in increased lateral root initiation Arabidopsis thaliana
(ATXTH19, XTH19, AT4G30290) expression gradually ceasing after LRs begin to grow Arabidopsis thaliana
constitutive overexpression of (ATXTH19, XTH19, AT4G30290) promoted LR development Arabidopsis thaliana
(ATXTH19, XTH19, AT4G30290) mutant average density of stage I LRPs similar to wild type Arabidopsis thaliana
(XET, XTH33, AT1G10550) activity was detected along primary root where lateral root primordia (LRPs) were forming Arabidopsis thaliana
moderate iron (Fe) deficiency (5 µm Fe) decreases density of first-order lateral roots (1° LR) Arabidopsis thaliana
Zinc (Zn) deficiency increases density of first-order lateral roots (1° LR) Arabidopsis thaliana
rescue of lateral root phenotype by exogenous auxin in ark2-1/pub9-1 seedlings is indicative of ARK2-PUB9 module regulating auxin accumulation in root tips during phosphate starvation Arabidopsis thaliana
more symmetric divisions consequently impairs lateral root primordium organogenesis Arabidopsis thaliana
(CLEL2, GLV6, RGF8, AT2G03830) and 10 are mainly transcribed in central smaller cells Arabidopsis thaliana
constitutive overexpression of xyloglucan endotransglucosylase/hydrolase 19 (ATXTH19, XTH19, AT4G30290) causes increased lateral root (LR) densities Arabidopsis thaliana
(ATMAPK3, ATMPK3, MPK3, AT3G45640) (ATMAPK6, ATMPK6, MAPK6, MPK6, AT2G43790) regulation of cell division patterning occurs in response to auxin
(CLEL2, GLV6, RGF8, AT2G03830) and 10 inhibition of asymmetric cell division negatively regulates number of initiated lateral roots Arabidopsis thaliana
brassinolides promote lateral root development Arabidopsis thaliana
GELP22 is repressed during lateral root (LR) development
rci3-1 mutant plants have lateral root density equal to wild-type plants lateral root density Arabidopsis thaliana
brassinosteroid signaling regulates lateral root formation Arabidopsis thaliana
(EMB71, MAPKKK4, YDA, AT1G63700) and (ATMEK4, ATMKK4, MKK4, AT1G51660) and 5 may be part of pathway during lateral root initiation Arabidopsis thaliana
(ATXTH19, XTH19, AT4G30290) mutant LR density similar to wild type Arabidopsis thaliana
(CLEL2, GLV6, RGF8, AT2G03830) and 10 signaling to larger flanking cells inhibits excess asymmetric cells division Arabidopsis thaliana
constitutive overexpression of xyloglucan endotransglucosylase/hydrolase 23 (XTH23, XTR6, AT4G25810) causes increased lateral root (LR) densities Arabidopsis thaliana
AtplaIVA-1 mutant roots show normal lateral root formation in response to auxin treatment Arabidopsis thaliana
xth19xth23 double mutant produced to observe LR phenotype Arabidopsis thaliana
(ATMAPK3, ATMPK3, MPK3, AT3G45640) (ATMAPK6, ATMPK6, MAPK6, MPK6, AT2G43790) regulate cell division patterning during lateral root development downstream of TMKs
(CLEL2, GLV6, RGF8, AT2G03830) and 10 overexpression lines exhibit naked root phenotype without emerged laterals Arabidopsis thaliana
(ATMAPK6, ATMPK6, MAPK6, MPK6, AT2G43790) mutants showed increased lateral root initiation Arabidopsis thaliana
mitogen-activated protein kinase 6 (ATMAPK6, ATMPK6, MAPK6, MPK6, AT2G43790) mutants complemented naked root phenotype of (CLEL2, GLV6, RGF8, AT2G03830) overexpression Arabidopsis thaliana
OsMED14_1 transcripts are present in lateral root primordia Oryza sativa
90° gravitropic stimulus assays induced LR initiation in highly synchronous manner on outer surface of curved roots Arabidopsis thaliana
xth19xth23-1 mutant development delayed relative to corresponding single mutants Arabidopsis thaliana
inhibition of asymmetric cell division in specified lateral root founder cells by (CLEL2, GLV6, RGF8, AT2G03830) and 10 negatively regulates number of initiated lateral roots Arabidopsis thaliana
first order lateral roots (LRs) with salt alone were induced to a similar extent as first order lateral roots (LRs) with salt and high nitrate Arabidopsis thaliana
first order lateral root primordia (LRPs) in stressed seedlings almost 60% reached emergence (E) stage Arabidopsis thaliana
(AtNPC4, NPC4, AT3G03530) knockout seedlings show no obvious differences in induction of lateral root formation compared to WT seedlings
(RGFR1, RGI1, AT3G24240) 4, and 5 are most likely the receptors of (CLEL2, GLV6, RGF8, AT2G03830) and 10 Arabidopsis thaliana
aberrant transcriptional regulation of (IAA19, MSG2, AT3G15540) and (IAA20, AT2G46990) in (NPC3, AT3G03520) is linked to defect in lateral root density in (NPC3, AT3G03520) with and without NAA
signaling of (CLEL2, GLV6, RGF8, AT2G03830) and 10 to larger flanking cells inhibits excess asymmetric cells division Arabidopsis thaliana
inhibition of excess asymmetric cells division by (CLEL2, GLV6, RGF8, AT2G03830) and 10 signaling strengthens lateral inhibition mechanisms Arabidopsis thaliana
mitogen-activated protein kinase 6 (ATMAPK6, ATMPK6, MAPK6, MPK6, AT2G43790) mutants complemented naked root phenotype of (CLEL2, GLV6, RGF8, AT2G03830) overexpression Arabidopsis thaliana
IDA-HAE/ (HSL2, AT5G65710) pathway is involved in auxin-induced lateral root emergence Solanum lycopersicum
(XTH23, XTR6, AT4G25810) mRNA expression obviously upregulated during development of LR Arabidopsis thaliana
XTH genes expression analyzed at all stages of LR development Arabidopsis thaliana
molecular mechanism underlying lateral root (LR) development has been well described in Arabidopsis Arabidopsis thaliana
(NPC3, AT3G03520) knockout seedlings show no obvious differences in induction of lateral root formation compared to WT seedlings
(CLEL2, GLV6, RGF8, AT2G03830) and (CLEL7, GLV10, RGF5, AT5G51451) genes are transcribed in lateral root initiation Arabidopsis thaliana
(ATXTH19, XTH19, AT4G30290) and (XTH23, XTR6, AT4G25810) involved in occurrence and development of LRs Arabidopsis thaliana
ROS has been proposed to function as important signal during auxin-induced LR formation Solanum lycopersicum
(XTH23, XTR6, AT4G25810) has stronger genetic effect on occurrence and development of LR than (ATXTH19, XTH19, AT4G30290) Arabidopsis thaliana
lateral roots in most seed plants arise from specific group of founder cells (FCs) in the pericycle
(ATMAPK6, ATMPK6, MAPK6, MPK6, AT2G43790) and likely also (ATMAPK3, ATMPK3, MPK3, AT3G45640) inhibit asymmetric cell division during lateral root initiation Arabidopsis thaliana
Loss-of-function glv6glv10 mutants result in increased lateral root initiation Arabidopsis thaliana
auxin when applied exogenously, can induce lateral root (LR) formation
xth23-1 and xth19xth23-1 mutants showed blockage in LR activation events at 32 h (PGI, PGI1, AT4G24620) compared with wild type Arabidopsis thaliana
GmPTF1 overexpression line 2 showed 38.2% increase in lateral root number at +P Glycine max
(LAX3, AT1G77690) expression is observed early on during LRP formation process
root cap cuticle was shown to facilitate lateral root emergence Arabidopsis thaliana
Arabidopsis lateral root development can be divided into eight stages (stages I-VII and emergence) Arabidopsis thaliana
growth rate profiles are short and highly variable among lateral roots pearl millet; maize
GmPTF1 overexpression line 3 showed 55.2% increase in lateral root length at +P Glycine max
similar phenotype in (AtNPC4, NPC4, AT3G03530) could be due to other regulatory effects
(EMB71, MAPKKK4, YDA, AT1G63700) and (ATMEK4, ATMKK4, MKK4, AT1G51660) and 5 may also be part of the pathway during lateral root initiation Arabidopsis thaliana
lateral root initiation occurs in pericycle
(LACS2, LRD2, AT1G49430) mutant has increased lateral root system in repressive osmotic conditions Arabidopsis thaliana
at least one factor involved in the ethylene signal network is required for first order lateral root (LR) proliferation component of the salt SIMR (salt-induced morphological response) Arabidopsis thaliana
lateral root (LR) branching density in OsMED14_1 RNAi plants is diminished in OsMED14_1 RNAi plants compared with wild-type Oryza sativa
exogenous IAA supply rescues LR phenotype in OsMED14_1 RNAi seedlings Oryza sativa
xth19xth23-1 mutant average density of stage I LRPs significantly lower than wild type Arabidopsis thaliana
GmPTF1 overexpression line 1 showed 27.0% increase in lateral root number at +P Glycine max
cyclic pattern of lateral root cap (LRC) cell death and cell removal contributes to positional signaling Arabidopsis thaliana
environmental signals impact lateral root specification
GELP73 is induced during lateral root (LR) development
Cucurbitaceae and Polygonaceae produce embryonic lateral roots
cell wall remodeling is important regulatory step for lateral root emergence
auxin-driven, polarized cell wall loosening enables positioning of the first anticlinal division plane
auxin restricts lateral root specification
up-regulated (ATSERK1, SERK1, AT1G71830) expression accompanies initiation of lateral root growth Arabidopsis thaliana
GmPTF1 was detected in primordia growth passing through epidermal tissue Glycine max
lateral root primordium (LRP) grows via biphasic, 8-stage developmental process Arabidopsis thaliana
(ATMAPK3, ATMPK3, MPK3, AT3G45640) are phosphorylated in response to addition of GLV6p Arabidopsis thaliana
Reduced LR density in (XTH23, XTR6, AT4G25810) mutants rescued by expressing (XTH23, XTR6, AT4G25810) under its native promoter Arabidopsis thaliana
GELP55 is induced during lateral root (LR) development
cell wall modifications are important for proper regulation of the first anticlinal cell divisions leading to stage I lateral root primordium
recruitment of founder cells (FCs) spreads laterally to phloem poles Arabidopsis thaliana
GmPTF1 overexpression line 3 showed 42.1% increase in lateral root length at −P Glycine max
lateral roots are formed post-embryonically
lateral root (LR) formation is continuous, repetitive, post-embryonic process Arabidopsis thaliana
dynamic gradients of auxin are mediated by cellular efflux requiring asymmetrically localized PIN proteins
tomato mutant yg-2 produces few or no lateral roots Solanum lycopersicum
LeHO-1 protein expression is associated with enhanced formation of lateral roots Solanum lycopersicum
tomato lateral root development is governed by auxin and NO signaling transduction pathway Solanum lycopersicum
ARABIDOPSIS CRINKLY4 (ACR4, CR4, AT3G59420) mutation leads to clusters of small pericycle cells Arabidopsis thaliana
GELP38 is repressed during lateral root (LR) development
lateral root initiation is linked to formation of a morphogenetic field of pericycle founder cells
continuity of phloem tissues is essential to support lateral root meristem growth Arabidopsis thaliana
localized regulation of turgor mediated by aquaporins facilitates emergence of lateral root primordia
auxin source modulates lateral root patterning
seven predictor TFs identified for Module #105 Arabidopsis thaliana
GmPTF1 overexpression line 1 showed 8.7% increase in lateral root number at −P Glycine max
periodic release of auxin by dying root cap cells seems to trigger lateral root specification
GDSL-type Esterase/Lipase Protein family (GELPs) is identified as auxin-regulated genes
vascular parenchyma starts to divide very early during lateral root development
GmPTF1 was mainly detected in emerged lateral root primordia originating from pericycle cells Glycine max
lateral root (LR) formation is regulated by series of coordinated events Arabidopsis thaliana
(ATFH8, FH8, FORMIN 8, AT1G70140) is involved in lateral root initiation Arabidopsis thaliana
(CLEL2, GLV6, RGF8, AT2G03830) and 10 inhibit asymmetric cell division in specified lateral root founder cells Arabidopsis thaliana
auxin affects mechanical properties of walls in overlying endodermis, cortex, and epidermis layers
transfer of seedlings to 100 mM salt stress caused almost complete inhibition of lateral root (LR) development Arabidopsis thaliana
auxin transport via (AtAUX1, AUX1, MAP1, PIR1, WAV5, AT2G38120) is essential for lateral root (LR) proliferation component of the salt SIMR (salt-induced morphological response) Arabidopsis thaliana
lateral roots (LRs) in stressed seedlings twice as many had developed in stressed seedlings Arabidopsis thaliana
abi4-1 and ein2-1 mutants displayed greater lateral root (LR) proliferation Arabidopsis thaliana
endogenous auxin transport and/or metabolism involved in salinity or osmotic stress-induced up-regulation of BnHO1 and subsequent lateral root (LR) formation Brassica napus
GmPTF1 overexpression line 2 showed 38.8% increase in lateral root length at +P Glycine max
lateral root spacing is implicated in recurrent programmed cell death in the root cap
GELP72 is induced during lateral root (LR) development
auxin affects turgor pressure of pericycle cells
abi1-1 mutant has significantly lower lateral root bud number Arabidopsis thaliana
era1-3 mutant augments lateral root number Arabidopsis thaliana
seedlings at 50 mM NaCl exhibited virtually twice the number of first order lateral roots (emerged LRs) Arabidopsis thaliana
osmotic stress caused a reduction in first order lateral root (LR) number Arabidopsis thaliana
auxin plays a role in lateral root (LR) emergence Arabidopsis thaliana
aux1-7 mutant completely blocked stimulation of lateral root (LR) proliferation under salt stress Arabidopsis thaliana
tir1-1 mutant displayed a large decrease in unstressed lateral root (LR) elongation Arabidopsis thaliana
auxins are essentially involved in development of lateral roots
auxin promotes formation of lateral roots
transfer from low nitrate (NO3−) to high nitrate (NO3−)-rich medium led to a dramatic enhancement of salt-induced increase in lateral root (LR) number Arabidopsis thaliana
lateral root primordia (LRPs) per root system in unstressed seedlings was twice the number of lateral root primordia (LRPs) per root system in stressed seedlings Arabidopsis thaliana
nitrate affects root branching
sucrose to nitrogen ratio is a key factor in the regulation of lateral root inhibition
overall increase in lateral root (LR) number in stressed roots is either due to the arrest of a proportion of lateral root primordia (LRPs) in unstressed plants at the pre-emergence stage or alternatively lateral root primordia (LRPs) in stressed roots develop at a faster rate lateral root primordia (LRP) development Arabidopsis thaliana
axr4-2 mutant can still induce lateral root (LR) proliferation under salt stress Arabidopsis thaliana
aba2-1 mutant is consistent with inhibitory role of abscisic acid (ABA) in lateral root (LR) development Arabidopsis thaliana
ZnPPIX applied after 1 day or 2 days of various treatments could observe only slight effect on lateral root (LR) formation Brassica napus
GUS activity is detected at lateral root formation sites Oryza sativa
(ATFH8, FH8, FORMIN 8, AT1G70140) may play an important role in maintaining intact actin structures during cell cycle reactivation in the pericycle cells or establishment of a new meristem Arabidopsis thaliana
Transgenic plants overexpressing (ATXTH19, XTH19, AT4G30290) upregulated LRP density in stages I and II Arabidopsis thaliana
50 μM ZnPPIX plus 10 mM NaCl treatment produced significant reduction in length and number of lateral roots (LRs) Brassica napus
auxin transport inhibitor NPA blocks lateral root formation
(AtTIR1, TIR1, AT3G62980) mutant did not appreciably induce any lateral roots Arabidopsis thaliana
lateral root primordia expressing no AIL/PLT clade member can be complemented by all AIL/PLT genes
multistep process of lateral root initiation and formation is controlled by molecular control mechanisms
stimulation of lateral root primordia (LRP) development by salt stress is associated with increased auxin accumulation in the lateral root primordia (LRPs) Arabidopsis thaliana
phosphate and sulphate deficiency induces increase in lateral root density in Arabidopsis Arabidopsis thaliana
involvement of auxin-related genes ( (AtAUX1, AUX1, MAP1, PIR1, WAV5, AT2G38120) RAU1, RAU4, (ARF8, ATARF8, AT5G37020) ) in lateral root development is still not clear in rice, especially in response to salt stress Oryza sativa
stressed seedlings produced 8-fold more second order lateral roots (LRs) Arabidopsis thaliana
abscisic acid (ABA) exerts an inhibitory effect on lateral root (LR) development at the post-emergence stage Arabidopsis thaliana
expanded expression domain of QC-specific markers occurs in developing lateral root primordia Arabidopsis thaliana
increase in rate at which primordia progress through entire developmental process explains reduction in stage 1 and 2 primordia Arabidopsis thaliana
mutants previously characterized to have altered cell wall composition were screened for lateral root phenotypes Arabidopsis thaliana
subsequent cell divisions took place at regular time intervals Arabidopsis thaliana
threshold level of (CLEL2, GLV6, RGF8, AT2G03830) activity is necessary to trigger first anticlinal asymmetric division
AtCEP1 and AtCEP3 overexpression reduces emerged lateral root number Arabidopsis thaliana
cytokinin oxidase/dehydrogenase (CKX) overexpression displays formation of lateral roots in closer proximity to the apical meristem
(ATSGT1B, EDM1, ETA3, RPR1, SGT1B, AT4G11260) tir1-1 mutant can still induce lateral root (LR) proliferation under salt stress Arabidopsis thaliana
ein2-1 mutant exhibited a similar phenotype to aba2-1 mutant Arabidopsis thaliana
VP1 mediates interaction between ABA and auxin Arabidopsis thaliana
salt stress led to a reduction in average lateral root (LR) length Arabidopsis thaliana
lateral root primordia (LRPs) in unstressed plants greatest proportion (42%) was still at pre-emergence (PE) stage Arabidopsis thaliana
etr1-3 mutant stimulated first order lateral root (LR) proliferation under salt stress Arabidopsis thaliana
pericycle cells are destined to form lateral root primordium
(ATVPS29, MAG1, VPS29, AT3G47810) mutant is epistatic to CA-rop2 induction of lateral root formation
(ATVPS29, MAG1, VPS29, AT3G47810) mutant lateral root formation defect suggests a possible connection between ROP signaling and endosomal trafficking-mediated PIN polarization
up-regulation of BnHO1 and lateral root (LR) formation suggests possible interrelationship between BnHO1 up-regulation and LR formation Brassica napus
lateral root initiation is dependent on auxin accumulation Arabidopsis thaliana
(CLEL2, GLV6, RGF8, AT2G03830) function in lateral root (LR) development requires analysis of potential links between peptide and auxin signaling pathways
trans-zeatin regulates lateral root (LR) spacing Arabidopsis thaliana
(ATIPT5, IPT5, AT5G19040) gene is switched on very early during formation of LRP in stage I Arabidopsis thaliana
overall level was over three-fold lower than 10 -10 M NAA treatment alone Medicago truncatula
lateral root emergence can be triggered by hormonal signals
founder cells undergo successive cell divisions to generate lateral root primordium (LRP) Arabidopsis thaliana
increasing NaCl levels up to 50 mM stimulates production of first order lateral roots (emerged LRs) Arabidopsis thaliana
ZnPPIX had no apparent effects on CO-induced lateral root (LR) formation Brassica napus
lateral root emergence can be triggered by mechanical cues
ABA negatively regulates emergence of lateral root primordia Arabidopsis thaliana
(LACS2, LRD2, AT1G49430) mutant hypersensitivity to ABA correlates with increased number of lateral root primordia Arabidopsis thaliana
axr1-3 mutant can still induce lateral root (LR) proliferation under salt stress Arabidopsis thaliana
events involving BnHO1 may occur within first 1 day of 10 mM NaCl and 2% PEG treatment Brassica napus
GmPTF1 mediates plant growth and phosphorus efficiency by regulating lateral root growth Glycine max
manipulation of MICROTUBULE ASSOCIATED PROTEIN 65-1 (ATMAP65-1, MAP65-1, AT5G55230) levels in (AtAUR1, AUR1, AT4G32830) (AtAUR2, AUR2, AT2G25880) mutants resulted in more lateral roots (LRs)
lateral root primordium (LRP) initiation starts by specifying first pericycle founder cell (FC) typically in direct contact with primary root protoxylem Arabidopsis thaliana
cytokinins inhibit through blocking pericycle founder cells cycling at the G2 to M phase transition
VP1-expressing plants in presence of ABA, are unable to form lateral roots after auxin application Arabidopsis thaliana
(ATGGT-IB, GGB, PGGT-I, AT2G39550) mutant shows increased lateral root formation in response to exogenous auxin application
lateral root (LR) proliferation component of the nitrate (NO3−)-enhanced salt SIMR (salt-induced morphological response) is associated with increased auxin accumulation Arabidopsis thaliana
lateral root primordia is parallel to short roots induced by progressive drought Arabidopsis thaliana
50 mM NaCl salt stress increased significantly first order lateral root (LR) number in top and middle segments Arabidopsis thaliana
(AtAUX1, AUX1, MAP1, PIR1, WAV5, AT2G38120) imports auxin into developing lateral root primordia (LRPs) Arabidopsis thaliana
similar proportion of lateral root primordia (LRPs) in unstressed and stressed seedlings being initiated correlates well with observation that a greater percentage of lateral root primordia (LRPs) in roots of stressed seedlings reach developmental stage E than in unstressed seedlings where a proportion of lateral root primordia (LRPs) appear to be arrested at the CP or PE stages Arabidopsis thaliana
emergence of lateral roots temporarily interrupts continuity of apoplastic barriers
(ARF8, ATARF8, AT5G37020) (auxin response factor 8) plays a role in regulating development of lateral roots
nitric oxide (NO) accumulation and distribution surrounds area where lateral root primordia typically develop Solanum lycopersicum
alkamides shows similar concentration-dependent pattern to lateral root formation Solanum lycopersicum
auxin polar transport is required for lateral root formation
(ATHKL1, HKL1, AT1G50460) blocks induction response to auxin to a level comparable with that observed in the absence of (ATHXK1, GIN2, HXK1, AT4G29130) Arabidopsis thaliana
abscisic acid (ABA) is important for initiation of short-root developmental program Arabidopsis thaliana
stressed lateral roots (LRs) exhibited approximately half the length of unstressed lateral roots (LRs) Arabidopsis thaliana
reduction in average lateral root (LR) length combined with decreased lateral root (LR) number led to a large fall in total lateral root (LR) length Arabidopsis thaliana
CO-promoted lateral root formation is suppressed by auxin transport inhibitor NPA Solanum lycopersicum
transcription factor regulators function in lateral root development Arabidopsis thaliana
U-box/ARM REPEAT containing E3 ligase (ATPUB9, PUB9, AT3G07360) interacts with S-DOMAIN RECEPTOR KINASE 1-6 (SDK6 (ARK2, AtARK2, RK2, AT1G65800) ) Arabidopsis thaliana
EXPANSIN A1 (AT-EXP1, ATEXP1, ATEXPA1, ATHEXP ALPHA 1.2, EXP1, EXPA1, AT1G69530) is required for auxin-driven, polarized cell wall loosening
second order lateral roots (LRs) only appeared in unstressed roots Arabidopsis thaliana
inducible responses of BnHO1 triggered by lower doses of NaCl and PEG apparently preceded lateral root (LR) formation Brassica napus
salt gradient stability with plastic bag covering enables prolonged experiment duration for lateral root initiation and elongation
nitric oxide (NO) shows similar concentration-dependent pattern to lateral root formation Solanum lycopersicum
lateral root develops from pericycle cells Arabidopsis thaliana
GmPTF1 overexpression line 1 showed 15.0% increase in lateral root length at −P Glycine max
lateral root primordium initiation and meristem establishment during root generation were notably affected by gentle modulation of (112A-2A, EMB30, GN, GNOM, MIZ2, VAN7, AT1G13980) expression Arabidopsis thaliana
mur8 mutant affected lateral root primordia emergence
mur9 mutant affected lateral root primordia emergence
seedlings germinated in liquid media supplemented with GLV6p SO3 had decreased emerged lateral root (ELR) density Arabidopsis thaliana
daughter cells of earlier dividing founder cell keep dividing before descendants of later dividing founder cell Arabidopsis thaliana
peptide secreted from endodermis may partially diffuse away pericycle cells
(ATIPT5, IPT5, AT5G19040) expression during further LRP development is expressed in most cells until emergence Arabidopsis thaliana
TOPLESS-LIKE 5 (ATAIG1, BHLH32, TMO5, AT3G25710) LATERAL ORGAN BOUNDARIES DOMAIN 4 (LHW, AT2G27230) transcription factors act a bit later than AUXIN RESPONSE FACTOR 7 (ARF7, BIP, IAA21, IAA23, IAA25, MSG1, NPH4, TIR5, AT5G20730) AUXIN RESPONSE FACTOR 19 (ARF11, ARF19, IAA22, AT1G19220) in lateral root initiation (LRI) Arabidopsis thaliana
Lohar et al. (2004) showed specific reduction in cytokinin levels in early lateral root primordia
second order lateral roots (LRs) with high nitrate and salt exhibited striking enhancement compared to second order lateral roots (LRs) with salt stress alone Arabidopsis thaliana
third order lateral roots (LRs) with high nitrate and salt exhibited striking enhancement compared to third order lateral roots (LRs) with salt stress alone Arabidopsis thaliana
nitrate (NO3−) enhancement of the salt stress-induced increase in lateral root (LR) number fully compensated for decreased average lateral root (LR) length Arabidopsis thaliana
third order lateral roots (LRs) were not observed in unstressed or osmotic-stressed roots Arabidopsis thaliana
second order lateral roots (LRs) are regulated in a different manner to first order lateral roots (LRs) Arabidopsis thaliana
lateral roots in monocots are initiated from pericycle near the phloem
aba mutants and the etr1-3 mutant exhibited a similar number of second order lateral roots (LRs) to the wild type Arabidopsis thaliana
bilirubin (BR) or Fe2+ showed no significant changes when applied lateral root formation Brassica napus
auxin redistribution is required for lateral root formation
low levels of nitric oxide (NO) mediate auxin-controlled lateral root development
auxin treatment about 2-fold increase in lateral roots Arabidopsis thaliana
carbon monoxide induces emergence of lateral roots Solanum lycopersicum
intracellular NO generation occurs during lateral root primordia initiation Solanum lycopersicum
tir1-1 mutant can still induce lateral root (LR) proliferation under salt stress Arabidopsis thaliana
He et al. (2005) demonstrated increase in lateral root density with high levels of NaCl in Arabidopsis Arabidopsis thaliana
atx1-1 mutant has affected cell patterning in both early and late stages of lateral root primordium (LRP) formation Arabidopsis thaliana
auxin transport and auxin synthesis may work together to produce threshold auxin level for LRP initiation and development
auxin appears to be a central player in regulation of lateral root formation Arabidopsis thaliana
mutants with altered levels of cellulose, xyloglucan, fucose, arabinose, rhamnose, xylose, and/or mannose were included in screening set Arabidopsis thaliana
cell wall remodelling enzymes in cells overlying primordia lead to cell separation and lateral root primordia emergence
programmed cell death (PCD)-mediated loss of function in meristematic activity of roots stimulates emergence of lateral roots
Hordeum vulgare root systems produce lower frequency of lateral roots in low-Pi environments Hordeum vulgare
1, 5, and 50 μM TIBA treatments show no significant effect of environmental Pi concentration on lateral root density Triticum aestivum
terminal differentiation of meristem and root cap provides continued elongation of remaining emerged lateral roots Arabidopsis thaliana; Hordeum vulgare
lateral root initiation and elongation results from balance between basipetal flux of cytokinin-like inhibitor and acropetal transport of auxin Lactuca sativa
mature (CLEL2, GLV6, RGF8, AT2G03830) peptide activates signaling pathway Arabidopsis thaliana
excessive anticlinal divisions in early stage lateral root primordia (LRPs) were observed in roots germinated in presence of (CLEL2, GLV6, RGF8, AT2G03830) SO3 or GLV6p Hyp SO3 peptides Arabidopsis thaliana
p (GATA23, AT5G26930) ::NLS-GFP expression occurs in (GATA23, AT5G26930) expression patches Arabidopsis thaliana
(GATA23, AT5G26930) RNAi lines observed overall decrease in number of emerged and nonemerged primordia Arabidopsis thaliana
35S promoter-driven expression of PLETHORA 3 (AIL6, PLT3, AT5G10510) PLETHORA 5 (AIL5, CHO1, EMK, PLT5, AT5G57390) and PLETHORA 7 (AIL7, PLT7, AT5G65510) in (ARF7, BIP, IAA21, IAA23, IAA25, MSG1, NPH4, TIR5, AT5G20730) (ARF11, ARF19, IAA22, AT1G19220) exaggerates roles in early-stage primordium initiation Arabidopsis thaliana
decrease in DR5 signal intensity correlates with diminution of the number of prebranch sites and lateral roots (LRs) Arabidopsis
makr4-1 mutant produced significantly fewer lateral root primordia (LRP) Arabidopsis
pericycle cells divide anticlinal along the shoot-root axis Arabidopsis thaliana
Arabidopsis seedlings grown on agar plates treated with abscisic acid (ABA) for 2 days resulted in lack of lateral roots in the root segment formed in the presence of abscisic acid (ABA) Arabidopsis thaliana
shrimp-shell chitin elicits lateral root developmental response
SnRK2.10–YFP fusion protein is not detectable in lateral root primordia (LRP) during initial stages of development Arabidopsis thaliana
SnRK2.10–YFP fusion protein specifically accumulates in developing vascular tissue of newly emerged lateral root Arabidopsis thaliana
formation of lateral root primordia involves dynamic gradients of auxin
carbon monoxide (CO) treatment induces emergence of lateral roots Solanum lycopersicum
auxin activates pericycle cell division
(PLT2, AT1G51190) appears only at later stages within lateral root primordium (LRP) Arabidopsis thaliana
(AIL7, PLT7, AT5G65510) complementation line exhibits substantial clustering of lateral root primordia (LRP) Arabidopsis thaliana
drought rhizogenesis results in lateral root primordia formed at a normal density and remain blocked at the meristem activation phase
phenotypic similarity between the xerobranching and hydropatterning responses would suggest that xerobranching is an extreme manifestation of hydropatterning Zea mays; Hordeum vulgare
AM fungi-enhanced lateral root development in rice requires CHITIN ELICITOR RECEPTOR KINASE 1 (AtCERK1, AtLYK1, CERK1, LYK1, LYSM RLK1, AT3G21630) Oryza sativa
methylene blue staining showed lateral root primordia initiated normally in the (ATORC3, ORC3, AT5G16690) mutant Oryza sativa
carbon monoxide regulates tomato lateral root development Solanum lycopersicum
control roots at 72 h detect 26 kDa LeHO-1 protein band Solanum lycopersicum
LeHO-1 protein in CO-treated roots shows parallel change with lateral root emergence Solanum lycopersicum
pericycle cells become pluripotent Arabidopsis thaliana
Arabidopsis mutant (ATHO1, GUN2, HO1, HY1, HY6, TED4, AT2G26670) exhibits no lateral roots Arabidopsis thaliana
application of exogenous auxin improves number of lateral roots
auxin-regulated (AP2, AtAP2, FL1, FLO2, AT4G36920) (ATERF13, EREBP, ERF13, AT2G44840) gene (PUCHI, AT5G18560) mediates lateral root initiation
auxin local accumulation is required for lateral root formation
lateral root emergence primarily depends on changes in cell mechanical properties induced by auxin
IAA transported to root promotes lateral root formation Arabidopsis thaliana
auxin-resistant (AXR1, AT1G05180) mutation interrupts short-root developmental program Arabidopsis thaliana
salt stress affects lateral root density in different ways
RAU1 (RELATED TO (AtAUX1, AUX1, MAP1, PIR1, WAV5, AT2G38120) ) is important for lateral root initiation and development Oryza sativa
HO-1 could be responsible for lateral root development
carbon monoxide participates in NO-regulated lateral root development
pericycle expresses MtSERK1 Medicago truncatula
lateral root initiation index in mpk6wb/lr mutant is significantly higher in mpk6wb/lr mutant compared to wild-type seedlings Arabidopsis thaliana
asymmetric pericycle cell division could still be seen in DEX-treated InAGN9 roots Arabidopsis thaliana
100nM NAA stimulated primordia to grow into lateral roots Arabidopsis thaliana
lateral root primordium (LRP) activation is regulated by auxin Arabidopsis thaliana
cytokinin and ethylene act as antagonists to auxin Arabidopsis thaliana
T-DNA insertion in (XEG113, AT2G35610) is causal for mutant phenotype in lrd5-1 Arabidopsis thaliana
time between first and second anticlinal divisions was on average 4.7 hours (284 minutes) Arabidopsis thaliana
(CLEL2, GLV6, RGF8, AT2G03830) expression starts in lateral root founder cells (LRFCs)
(CLEL2, GLV6, RGF8, AT2G03830) transcription pattern coincides spatially and temporally with auxin maximum
Casparian strip may filter out (CLEL2, GLV6, RGF8, AT2G03830) peptide
expression of several cytokinin synthesis genes, both IPT and LOG genes, as well as of cytokinin-degrading CKX genes has been reported to occur during LR formation Arabidopsis thaliana
(LOG4, AT3G53450) expression during further LRP development is expressed in most cells until emergence Arabidopsis thaliana
carbon monoxide (CO) induces similar morphological response in Arabidopsis thaliana lateral root development Arabidopsis thaliana
Triticum aestivum seedlings grown in low-Pi media supplemented with 1 μM 2,4-D demonstrate significant recovery in root branching frequency Triticum aestivum
short peptide treatments occurs immediately after lateral root (LR) induction
D1:HyP4,11 peptide has particularly strong effects for inhibiting lateral root emergence Medicago truncatula
D1:HyP4,11 irreversible inhibition of lateral root emergence possibly by perturbing the programming of lateral root formation Medicago truncatula
D2:HyP11 significantly increased number of non-emerged lateral root primordia at stages III–IV Medicago truncatula
auxin maxima correlating with lateral root formation as reflected by strong GH3:GUS staining at CCP sites was not sufficient to encourage lateral root formation in the presence of D1:HyP4,11 Medicago truncatula
atx1-1 mutant has affected cell patterning during lateral root primordium (LRP) morphogenesis Arabidopsis thaliana
weak (112A-2A, EMB30, GN, GNOM, MIZ2, VAN7, AT1G13980) allele fwr mutant shows LRP initiation sensitivity to (112A-2A, EMB30, GN, GNOM, MIZ2, VAN7, AT1G13980) activity
(ATCESA8, CESA8, IRX1, LEW2, AT4G18780) mutant was screened for lateral root phenotypes Arabidopsis thaliana
low levels of LRD5/ (XEG113, AT2G35610) expression in other cell types at root tip is hypothesized to be responsible for increased lateral root primordia emergence in lrd5 mutants
spatial distribution of lateral root production is tightly controlled process in which auxin Arabidopsis thaliana
auxin plays key role in spatial distribution of lateral root production Arabidopsis thaliana
YFP fluorescence is hardly detectable in the cytokinin-deficient 35S:CKX1 and (ATIPT3, IPT3, ROCK4, AT3G63110) 5 7 background Arabidopsis thaliana
carbon monoxide (CO) induces similar morphological response in Brassica napus lateral root development Brassica napus
lrd5-2 seedlings showed no increase in number of primordia Arabidopsis thaliana
two Family 77 glycosidases with varying functions in cell wall modification affect lateral root formation Arabidopsis thaliana
many unrelated mutants in cell wall synthesis demonstrate similar lateral root phenotypes
lateral root initiation process starts with first division of lateral root founder cells (LRFCs)
overexpression of several GLV genes results in strong decrease in emerged lateral root (ELR) density
truncated (CLEL2, GLV6, RGF8, AT2G03830) ORF lacking signal peptide (SP) produced same number of emerged lateral roots as control Arabidopsis thaliana
(CLEL2, GLV6, RGF8, AT2G03830) may be involved in cell polarity
(CLEL2, GLV6, RGF8, AT2G03830) peptide gradient controls polarity cue
synthetic auxin, 1-naphthaleneacetic acid (NAA) can rescue CEP peptide-mediated inhibition of lateral root formation and emergence Medicago
root region that had been exposed to the peptide delineated from region that grew subsequent to peptide removal Medicago truncatula
carbon monoxide (CO) plays a critical role in controlling architectural change in tomato roots Solanum lycopersicum
auxin influx carrier (AtAUX1, AUX1, MAP1, PIR1, WAV5, AT2G38120) mediates lateral root initiation
nutrients such as NO3− or Pi can be one of the major environmental signals that affect lateral root development
carbon monoxide demonstrates functional interaction with auxin Solanum lycopersicum
cytoskeletal dynamics influences lateral root initiation and emergence
salt stress led to an increase in lateral root (LR) number Arabidopsis thaliana
(ATSGT1B, EDM1, ETA3, RPR1, SGT1B, AT4G11260) tir1-1 mutant enhanced phenotype of tir1-1 mutant Arabidopsis thaliana
lateral root development is regulated by hormones and environmental factors
haemin-blocked inhibition of lateral root (LR) formation declined to similar extent to rapeseed seedlings incubated in 50 μM ZnPPIX alone Brassica napus
auxin flow to endodermal cells promotes further modifications in wall properties of endodermal cells
slight decrease in osmotic potential in artificial medium induces formation of lateral root primordia Arabidopsis thaliana
1 μM haemin significantly blocked inhibition of lateral root (LR) development induced by 100 mM NaCl or 20% PEG Brassica napus
polar movement of nuclei and asymmetric cell divisions in slr-1 mutant never resulted in formative divisions that normally precede formation of functional lateral root primordium Arabidopsis thaliana
(AIL6, PLT3, AT5G10510) (AIL5, CHO1, EMK, PLT5, AT5G57390) (AIL7, PLT7, AT5G65510) triple mutant exhibits multiple changes in lateral root development Arabidopsis thaliana
auxin analog NAA promoted prebranch site production in the root segment lacking the root meristem and oscillation zone (OZ) Arabidopsis
observation of the repression of lateral root formation early after the onset of transient water deficit or abscisic acid (ABA) treatment appears to be distinct from well-described effects of abscisic acid (ABA) under prolonged water deficit Zea mays; Hordeum vulgare
abscisic acid (ABA) levels accumulate as the root tip experiences a transient water deficit represses lateral root priming Zea mays; Hordeum vulgare
(WOX5, WOX5B, AT3G11260) gene functions in lateral root primordia tissues
SnRK2.4–YFP fusion protein is expressed at low levels in developing vascular tissue of emerged lateral root Arabidopsis thaliana
nitric oxide (NO) is strongly implicated in lateral root development under phosphorus-deficiency condition
CO interaction with auxin-responsive signal transduction cascades leads to modification of lateral root development Solanum lycopersicum
CO-treated roots detect LeHO-1 protein at 72 h Solanum lycopersicum
auxin shows similar concentration-dependent pattern to lateral root formation Solanum lycopersicum
lateral root formation can then be initiated after seedling transfer to plates with NAA Arabidopsis thaliana
(ARABIDILLO-1, ARABIDILLO1, FBX5, AT2G44900) and (ARABIDILLO-2, ARABIDILLO2, AT3G60350) promote lateral root development Arabidopsis thaliana
blocking polar auxin transport at the interface of the root inhibits lateral root initiation
low dose carbon monoxide (1–10 μM) enhances lateral root formation Solanum lycopersicum
WUSCHEL-RELATED HOMEOBOX 5 (WOX5, WOX5B, AT3G11260) regulates tissue identities
ITS2 cleavage lines showed significant reduction in lateral root number to 65% (100 μM Dex) compared to approach without Dex-induction (0 μM Dex) Arabidopsis thaliana
magnesium (Mg) deficiency decreases density of first-order lateral roots (1° LR) Arabidopsis thaliana
copper (Cu) deficiency increases density of first-order lateral roots (1° LR) Arabidopsis thaliana
(ATAZG1, AZG1, AT3G10960) expression was localized to vascular cells at the base of the elongating lateral root Arabidopsis thaliana
PLETHORA (PLT) genes regulates tissue identities
Interacting effects of auxin and cytokinin disrupt lateral root (LR) initiation Arabidopsis thaliana
(HSR8, MUR4, UXE1, AT1G30620) mutant affected lateral root primordia emergence
Pi-dependent modulation of auxin transport and corresponding AUX/IAA expression alteration provides potential mechanism for decreased root branching in Triticum aestivum grown in low-Pi environments Triticum aestivum
dome-shaped primordium is prerequisite for successful emergence of lateral roots Arabidopsis thaliana
J0121>GLV6 transactivation yielded severe phenotype similar to 35Spro:GLV6 roots Arabidopsis thaliana
(ATIPT5, IPT5, AT5G19040) expression in the emerged LR becomes confined to the root tip Arabidopsis thaliana
D1:HyP4,11 induced the highest number of CCP sites Medicago truncatula
plants grown for 14 days in total with root tips at the time of transfer marked Medicago truncatula
NAA promotes lateral root emergence or both initiation and emergence Arabidopsis thaliana; Oryza sativa; Nicotiana tabacum
(GATA23, AT5G26930) expression regulates root branching patterns Arabidopsis thaliana
p (GATA23, AT5G26930) ::NLS-GFP expression occurs just before first asymmetric division Arabidopsis thaliana
(AIL5, CHO1, EMK, PLT5, AT5G57390) complementation line exhibits substantial clustering of lateral root primordia (LRP) Arabidopsis thaliana
makr4-1 mutant had unaltered prebranch sites numbers Arabidopsis
short induction of BREVIPEDICELLUS/ (BP, BP1, KNAT1, AT4G08150) in the vascular cambium at the onset of periderm development is sufficient to promote lateral root (LR) program Arabidopsis thaliana
arbuscular mycorrhizal fungi increase lateral root primordia initiation Oryza sativa
lateral root clock controls pace of lateral root initiation Arabidopsis thaliana
(ATORC3, ORC3, AT5G16690) mutant emerges with similar number of lateral roots as wild-type (WT) at 26°C or lower Oryza sativa
tomato haem oxygenase-1 (LeHO-1) proteins and transcripts increased parallel to lateral root (LR) development Solanum lycopersicum
lateral roots (LRs) are derived from lateral root primordia Arabidopsis thaliana
LeHO-1 expression pattern in tomato roots is well matched with lateral root emergence under normal conditions Solanum lycopersicum
(ATAZG2, AZG2, AT5G50300) expression is exclusively in lateral root primordia overlaying tissues Arabidopsis thaliana
mutant lrt1 displays cell wall-related defects Zea mays
LATERAL ORGAN BOUNDARIES DOMAIN16 (ASL18, LBD16, AT2G42430) acts as regulator of lateral root development Arabidopsis thaliana
de novo formation of lateral root quiescent center (QC) requires SCARECROW (SCR, SGR1, AT3G54220) expression Arabidopsis thaliana
(CYC1, CYCB1, CYCB1;1, AT4G37490) ::GUS activity showed lateral root primordia initiated normally in the (ATORC3, ORC3, AT5G16690) mutant Oryza sativa
(ATORC3, ORC3, AT5G16690) RNAi lines show very early-stage lateral root primordia (LRPs) in root cross-sections Oryza sativa
exogenous auxin application at 12 h increases lateral root primordia number Bupleurum chinense
aberration in emergence process strongly contributes to lateral root formation phenotype in lrd5 mutants Arabidopsis thaliana