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gene expression profiling

11654 relationships annotated with this phrase. Showing first 500 of 11654.
Source entity Relationship Target entity Species
RNA-seq generated high-quality sequencing data with mapping rates > 89.7% Triticum aestivum; Aegilops longissima; Triticum urartu
93 unique transcripts were differentially expressed at all three developmental stages Zea mays
microarray experiments compared gene expression between wild-type and rtcs seedlings Zea mays
544 unique transcripts were differentially expressed at T4 Zea mays
RNA-seq was performed on WT and erf.c1-1 fruits that were harvested at the Br + 3 stage and infected with B. cinerea for 72 h Solanum lycopersicum
Brassica napus immature seeds at 5 and 9 DAF used to construct SAGE library Brassica napus
Supplemental Table 4 includes probeset IDs, corresponding gene identifiers, gene names, and fold changes with p-values
RNA-seq assay was performed on bacteroids isolated from WT and debino1 nodule cells Medicago truncatula
Arabidopsis laser capture microdissection (LCM) expression data sets analyzed were generated with Agilent 4x44K Arabidopsis array Arabidopsis thaliana
277 differentially accumulated unique transcripts were observed at T0 Zea mays
4195 DEGs were screened, including 2326 upregulated genes and 1869 downregulated genes Paeonia suffruticosa
12 dpi nodules were selected for bacteroid RNA-Seq analysis Medicago truncatula
microarray data is used to predict functional similarities and interactions among genes
qRT–PCR was used to re-examine mRNA levels of (LCR77, PDF1.2, PDF1.2A, AT5G44420) and a number of other differentially expressed genes
similar observations have been reported in analysis of other hsf mutants
(SCD1, AT1G49040) showed moderate but significantly higher expression in trichomes
22,000 gene probes from the greenhouse experiment analyzed in greenhouse experiment Hordeum vulgare
GeneChip Two-Cycle cDNA Synthesis Kit is used for target preparation
GeneChip Two-Cycle cDNA Synthesis Kit enables signal amplification
quantile normalization is applied to Affymetrix microarray probe-level data
differentially expressed (RLK, AT5G67280) genes can be viewed in Supplemental Table 2 Arabidopsis thaliana
transcript profiling of msi1-cs leaves identified 337 down-regulated probe sets Arabidopsis thaliana
global transcriptome in developing seeds at 10 or 15 DAF was compared among transgenic lines and wild type Oryza sativa
transcriptome profiles for the Zmptac2 and ZmmurE mutants were quite similar Zea mays
probes with exact 25-mer match were identified by blastn sequence comparison Oryza sativa
(KIS, TFCA, AT2G30410) showed moderate but significantly higher expression in trichomes
differential expression analysis identified defense-responsive genes Oryza sativa
GeneChip Fluidics Station 450 is used for washing and staining steps
control seedling replicates showed Pearson correlation coefficient of 0.9918, 0.9925, and 0.9929 Oryza sativa
DUF26 subfamily registered 207 differential responses Arabidopsis thaliana
11565 genes were co-expressed in trichomes and processed shoots
datasets of genes expressed at 22°C in WT versus (AT-HSFB1, ATHSF4, HSF4, HSFB1, TBF1, AT4G36990) /B2b plants were compared differentially expressed genes
gl3–sst (SIM, AT5G04470) probes were hybridized to (ATH1, AT4G32980) GeneChip
putative allergens expression characterized using Affymetrix 57K rice GeneChip microarray Oryza sativa ssp. japonica
16 genes appeared to be differentially expressed by a factor of more than two
array preparation is performed as part of microarray experiments Arabidopsis thaliana
parental line Minghui86 (MH86) source organism for total RNA extraction Oryza sativa
large number of differentially regulated group 2 PME were analyzed for detailed study of several garden cress group 2 PME Lepidium sativum
transcriptome of young (MEX1, RCP1, AT5G17520) leaves had far fewer changes than transcriptome of mature (MEX1, RCP1, AT5G17520) leaves
10 genes encoding transcription factors had expression detected in mature trichome transcriptome
custom-designed manually annotated microarray encompasses 453 probes representing P450 family and family 1 UGTs
genes included in declining expression clusters were further investigated using Corvina expression atlas
DILS microarray data set compared to developmental senescence (DLS) microarray data sets Hordeum vulgare
data from all 12 slides were combined to identify genes with highest probability of differential expression
known PEP-dependent mRNAs (e.g. (PSAA, ATCG00350) (PSAB, ATCG00340) and (RBCL, ATCG00490) ) were revealed in microarray data Zea mays
(CER3, FLP1, WAX2, YRE, AT5G57800) showed moderate but significantly higher expression in trichomes
279,263,207 reads are selected for further analysis Arabidopsis thaliana
GC Robust Multi-array Average (GCRMA) is used for probe set intensity calculation
labeled cRNA fragmented and hybridized to Affymetrix (ATH1, AT4G32980) GeneChip arrays
microarray analysis identified up-regulated genes in (CPC, AT2G46410) overexpression Arabidopsis thaliana
(ATTOP6B, BIN3, HLQ, HYP6, RHL3, TOP6B, AT3G20780) had expression detected in mature trichomes
(BCHA1, SPI, AT1G03060) showed moderate but significantly higher expression in trichomes
Microarray analysis of plastid transcriptomes in apical versus basal leaf tissue yielded profiles that were very similar to profiles of wild type versus Zmptac2 or ZmmurE mutants Zea mays
(GUN1, AT2G31400) is highly expressed across all developmental stages Arabidopsis thaliana
transcriptome profiles included set of dominating peaks representing severe deficiencies for a subset of RNAs Zea mays
PME and PMEI transcripts in garden cress seeds were identified in garden cress seeds Lepidium sativum
dChip software is used for GEO comparisons of different sporophytic tissues Oryza sativa
12 plastid tRNAs were further assayed by RNA gel-blot hybridization Zea mays
C-Lectin subfamily registered six differential responses Arabidopsis thaliana
microarray analysis performed using RNA from abi1-3 and Col-0 seedlings treated with or without IAA Arabidopsis thaliana
pollen biological/technical replicates showed Pearson correlation coefficient of 0.9898, 0.9931, and 0.9971 Oryza sativa
Affymetrix Arabidopsis (ATH1, AT4G32980) GeneChips® used throughout gene expression experiment Arabidopsis thaliana
Syngenta custom Arabidopsis GeneChip array (sySYNG002a) assays changes in (RLK, AT5G67280) transcript levels Arabidopsis thaliana
350 differentially accumulated unique transcripts were observed at T2 Zea mays
44K microarray was used to examine changes in gene expression
SD-3 subfamily registered six differential responses Arabidopsis thaliana
group II A. tauschii accessions have quite similar pattern of gene expression Aegilops tauschii
(CDC73, PHP, AT3G22590) mutant roots were analyzed by RNA-seq analysis Oryza sativa
plots underrepresent magnitude of plastid mRNA deficiencies in the mutants Zea mays
seed compartment-specific gene expression analysis was performed using Complete Arabidopsis Transcriptome Microarray-spotted PCR-amplified gene-specific tag-based chips Lepidium sativum
Arabidopsis eFP Browser contains extensive collection of gene expression microarray data Arabidopsis thaliana
PCR data of the strongly heat-induced genes such as (ATHSFA2, HSFA2, AT2G26150) and AtHsfB1 show greater discrepancy in expression levels to the microarray data
1764 genes were specific to trichomes
RNA-sequencing analysis identified inhibition of brassinosteroid synthesis, fatty acid synthesis, and photosynthesis Arabidopsis thaliana
BY240 is source of early P4 leaves, late P4 leaves, 1/4 P5 leaves, 1/2 P5 leaves, and P6 leaves
SAGE library from SE21s contains 69 102 tags Oryza sativa
mRNA-seq provides coverage of approximately 16,000 transcripts Arabidopsis thaliana
line IDH4 evaluated using (ATTOM1, TOM1, AT4G21790) microarrays
signal quantification is performed as part of microarray experiments Arabidopsis thaliana
stress/stimuli responsive genes in (AtC3H66, TZF9, AT5G58620) mutant showed concordance between transcriptome and translatome data Arabidopsis thaliana
differentially expressed genes (DEGs) resulted in 2685 up- and 2103 downregulated DEGs Arabidopsis thaliana
RNA expression profiles of Arabidopsis thaliana (GUN1, AT2G31400) and (ABAR, CCH, CCH1, CHLH, GUN5, AT5G13630) mutants were compared to wild type (WT) controls Arabidopsis thaliana
focused microarray encompassing all Arabidopsis thaliana UGTs is more sensitive to measure variation in gene expression of relatively lowly expressed genes Arabidopsis thaliana
mature leaf blade is tissue used for expression profile analysis of ACL1 and ACL2
root is tissue used for expression profile analysis of ACL1 and ACL2
about a thousand more downregulated genes in the translatome compared with transcriptome Arabidopsis thaliana
flag leaves at grain-filling stage source material for total RNA extraction Oryza sativa
mature leaf sheath is tissue used for expression profile analysis of ACL1 and ACL2
isolated sperm cells have revealed genome-wide differential profiles of gene expression Arabidopsis thaliana
LY2186 hybrid showed transcriptional profile comparison of 41,776 detected tags Oryza sativa
1,183 differentially expressed genes (DGs) represent 2.8% of 41,776 detected tags Oryza sativa
expression levels of candidate genes are reported in maize RNA-seq gene atlas and Electronic Fluorescent Pictograph browser Zea mays
auxin experiments were performed using Affymetrix full genome (ATH1, AT4G32980) arrays Arabidopsis thaliana
expression tag libraries were constructed from untreated roots Solanum torvum
cloned concatemers sequenced by ABI3730 auto-sequencer (Perkin–Elmer) Oryza sativa
biotinylated cRNA hybridized to Affymetrix (ATH1, AT4G32980) Genome Array chips
P6 leaves is material used for expression analysis of ACL1 and ACL2 in leaves of different developmental stages
about 50% of genes on the chip were detected Affymetrix 1.1 ST Exon Array Chip Arabidopsis thaliana
HvXET4 and HvXET5 clustered singly HvXET gene family Hordeum vulgare
variant J234 found in 13 different A. tauschii accessions Aegilops tauschii
Western A. tauschii accessions (group III) differ in pattern of gene expression Aegilops tauschii
Affymetrix (ATH1, AT4G32980) microarray platform contains probeset Arabidopsis thaliana
approximately 5% of the total expressed genes were downregulated for 9 versus 10 DAP Zea mays
scanning is performed as part of microarray experiments Arabidopsis thaliana
super-hybrid rice LY2186 used for construction of SAGE library Oryza sativa
male-sterile line SE21s used for construction of SAGE library Oryza sativa
labeled samples were hybridized to microarrays Arabidopsis thaliana
translatome only changes represent 63.86% of complete (AtC3H66, TZF9, AT5G58620) dataset Arabidopsis thaliana
SAGE tags extracted by SAGE2000 software Oryza sativa
staged pollen grains have revealed genome-wide differential profiles of gene expression Arabidopsis thaliana
145 genes are identified from wild tomato accession (S. habrochaites cv. LA1777) Solanum habrochaites
SlSCL3 shows significantly higher expression in trichomes Solanum lycopersicum
mutant and wild-type associations are analyzed by RNAseq analysis
seed-specific Electronic Fluorescent Pictograph browser and eNorthern tool was used for in silico analysis of PME/PMEI transcript expression patterns Arabidopsis thaliana
SAGE library from LY2186 contains 69 064 tags Oryza sativa
HvXET3 and HvXET6 showed co-expression HvXET gene family Hordeum vulgare
RNA-seq analysis was used to analyze dynamic changes of endosperm transcriptomes Zea mays
most GT1 (small molecule GTs) members exhibit low expression in most tissues and stages Oryza sativa
33 GT loci, representing 45 gene models are rice-diverged and highly expressed in above-ground tissues Oryza sativa
SAGE library construction produced 207 266 tags Oryza sativa
upset diagram was generated to identify genes that were detected interactively or specifically in the samples Zea mays
RNA-seq enables transcriptome investigations in virtually any plant via de novo assembly
approximately 5% of the total expressed genes were downregulated for 7 versus 9 DAP Zea mays
transcriptomic analyses have been conducted on Haberlea rhodopensis Haberlea rhodopensis
148 genes are identified from cultivated tomato accession (S. lycopersicum cv. LA4024) Solanum lycopersicum
SlGRAS18 transcript is most abundant in root and developing fruit Solanum lycopersicum
1360 TFs were identified with FPKM ≥ 1 in at least one sample Zea mays
mir shoots grown without Fe had expression profile comparable to WT plants grown under similar conditions
transcriptome only changes represent 30.24% of complete (AtC3H66, TZF9, AT5G58620) dataset Arabidopsis thaliana
variant J234 found in 12 A. tauschii accessions of subpopulation II and one of subpopulation III Aegilops tauschii
variant J2 more abundantly expressed in nine bread wheat accessions Triticum aestivum
single-cell RNA-sequencing enables study of transcriptional content of single cells
differential expression was observed mostly at a quantitative level Gossypium hirsutum
128 differentially expressed cDNAs represented 92 unique contiguous sequences (contigs)
microarray analysis compared transcript profile of pea SAM to other types of meristems (AM and RAM) and non-meristem tissues Pisum sativum
expression pattern of genes in group 4 did not change significantly before 11 DAP Zea mays
single-cell multi-omics profiles transcriptomes
Pearson's distance correlation matrix was generated to compare transcriptomes from each sample Zea mays
leaf and kernels showed strong tissue specificity Zea mays
SAGE library from MH86 contains 69 110 tags Oryza sativa
relative accumulation of mRNAs from C05811H06, C05133B06, and C31502B08 paralleled that observed by microarray hybridization Poncirus trifoliata
single-cell RNA-sequencing (scRNA-seq) allows to study transcriptional information enclosed in cells
expression levels of genes in group 3 showed sharp reduction at about 13 DAP Zea mays
RNAseq analysis identifies key fungal and plant genes that define the symbiotic state
all (GT61, AT2G41640) members have higher expression in grasses compared to dicots Oryza sativa
biological replicates were analyzed microarray hybridization
Rice Gene Expression Anatomy Viewer provides number of ESTs from rice tissues Oryza sativa
results from LMD and microarray analysis provide insights into cell-type-specific gene expression Citrus clementina
BGI/Yale microarray platform is microarray platform Oryza sativa
rice-diverged genes identified from EST, MPSS, and microarray expression datasets Oryza sativa
SuperSAGE method was adapted for use with Illumina sequencing technology
homodirectional changes in (AtC3H66, TZF9, AT5G58620) dataset constitute 3.61% of all genes Arabidopsis thaliana
massively parallel signature sequencing (MPSS) is functional genomic data Oryza sativa
AB517655 and AB517656 had correlation coefficient of 0.94
106 genes were found to be differentially expressed between juicy and woolly fruit Prunus persica
RT-PCR analysis conducted for a subset of 23 ESTs representing different expression patterns (Type I–IV) Gossypium hirsutum
heat-stressed periderm was analyzed using transcriptome analysis Solanum tuberosum
eight differentially expressed genes were selected for expression profile analyses using qRT-PCR
apical meristem-expressed gene sequences were used to make 12K microarray Pisum sativum
approximately 5% of the total expressed genes were upregulated for 9 versus 10 DAP Zea mays
Arabidopsis thaliana oligonucleotide microarray was used for genome-wide transcriptomic analysis Brassica oleracea
four DEGs are conversely regulated in leaves and roots of transgenic T-34 Gossypium hirsutum
microarray experiments were carried out during 2004/2005 Hordeum vulgare
expression patterns of putative Rop- and Rab-GAP-, GEF-, and GDI-interacting proteins differ among different organs and developmental stages Vitis vinifera
total RNA extracted from plants grown in the absence of iron (Fe-deficient) was labelled and hybridized to cDNA microarray Poncirus trifoliata
(FTSH2, VAR2, AT2G30950) green and white sectors showed same trend as Col and (FTSH2, VAR2, AT2G30950) white sectors comparison Arabidopsis thaliana
transgenic Arabidopsis overexpressing a stress response brassinosteroid receptor gene (BR1) has similar ratio of DEGs to total ESTs as transgenic T-34 Arabidopsis thaliana; NA
differentially expressed genes 750 showed at least 2-fold (log 2) changes in expression in comparison of SN2 vs. SN1 Hordeum vulgare
single-cell genomics enables characterization of haploid gene expression
microarray data provide broad picture of the expression differences among GT families Oryza sativa
Rice Gene Expression Anatomy Viewer was used for digital expression analysis of rice GTs Oryza sativa
cluster of nine gene models (six loci) in GT47 have high expression Oryza sativa
(ATP8, AtRCD1, CEO, CEO1, RCD1, RIMB1, AT1G32230) expression pattern is consistent with publicly available microarray data Arabidopsis thaliana
cost of EST method prevents deep and broad application of EST sequencing Oryza sativa
laser microdissection (LMD) has been applied to profile gene expression in abscission zones
15,266 clones on the array represent 11,412 verified cDNA clones Solanum tuberosum
reverse subtraction library (RSL) contained 61% of clones with higher transcript levels in RSL than FSL
VvSWEET17a is highly expressed in leaves, stems and tendrils Vitis vinifera
AGP gene expression was evaluated using microarray experiments from Genevestigator and Arabidopsis eFP Browser Arabidopsis thaliana
hierarchical clustering algorithm used to analyze profile changes of differentially transcribed genes
Arabidopsis U-box genes expression investigated using Genevestigator database microarray data Arabidopsis thaliana
cDNA microarray was used to identify genes specifically or preferentially expressed in transgenic T-34 Gossypium hirsutum
36 common DEGs are found in leaves and roots of transgenic T-34
6237 tags were ascribed to TB or eggplant unigene sequences Solanum torvum; Solanum melongena
genes in (FTSH2, VAR2, AT2G30950) white sectors showed either increase or decrease in white sectors Arabidopsis thaliana
transcriptomes were clustered into two groups: 7–11 and 13–25 DAP Zea mays
expression pattern of genes in group 4 slightly decreased after 11 DAP Zea mays
F1 hybrid in Nipponbare × 93-11 cross gene expression profile less similar to paternal line 93-11
expression tag libraries were constructed from Cd-treated roots Solanum torvum
amplified RNA from each sample hybridized to Affymetrix 22K Barley GeneChips Hordeum vulgare
six loci in GT47 are identified as having high expression in monocots relative to dicots Oryza sativa
laser microdissection (LMD) provides sensitive means to monitor gene expression
GO category was not detected that was significantly different between Col and (FTSH2, VAR2, AT2G30950) green sectors Arabidopsis thaliana
qPCR data generally supported microarray data Hordeum vulgare
Operon longmer microarrays were used to compare gene expression in Arabidopsis stem segments over a developmental gradient Arabidopsis thaliana
potato microarray uses custom Agilent platform Solanum tuberosum
high quality RNA from cryosections could be subjected to amplification procedure
RT-PCR expression profile confirmed microarray expression profile Vitis vinifera
microarrays provide high-throughput tool for analyzing gene expression at the whole-genome level Oryza sativa
Os01g53350 has high expression in shoot tissue and 14-day-old leaf Oryza sativa
some putative Rop- and Rab-GAP-, GEF-, and GDI-interacting proteins are specific to an organ or to a developmental stage Vitis vinifera
Contig1309_at was among 140 most differentially expressed genes all >21,000 sequences on the chip Hordeum vulgare
Atscp2-1 seedlings show 54 up-regulated and 40 down-regulated genes in microarray analysis Arabidopsis thaliana
modified RMA algorithm using only signal intensities from the last five probes of each probe set enabled obtaining reliable expression data for most metal homeostasis genes in the different tissue of the developing barley grain Hordeum vulgare
ear leaf at 13 DAP was used as control for RNA-seq analysis Zea mays
sense strand signatures (Classes 1, 2, 5, and 7) used in MPSS analysis Oryza sativa
total RNA extracted from plants grown in the presence of iron (control) was labelled and hybridized to cDNA microarray Poncirus trifoliata
GmMT7 transcript accumulated to high level in embryos, flowers and pod wall tissues Glycine max
five other candidates that have enriched expression in SAM in situ expression of has also been examined Pisum sativum
number of expressed genes in maize endosperm showed dramatic changes between mid and late stages of development Zea mays
(AGP18, ATAGP18, AT4G37450) fits into category of arabinogalactan proteins transcribed preferentially in pistils Arabidopsis thaliana
reverse-transcribed RNAs were hybridized to Agilent Arabidopsis ver. 4 DNA chip Arabidopsis thaliana
transcriptomic approaches identified genes in anther walls and/or pollen Arabidopsis thaliana; Oryza sativa; Zea mays
Fold-change values used as selection criterion for differential transcripts
oligonucleotide microarrays is functional genomic data Oryza sativa
laser microdissection (LMD) has been applied to profile gene expression in meristems
transgenic T-34 roots contain 672 differentially expressed genes (DEGs) Gossypium hirsutum
22K Affymetrix Barley 1 microarray was used to screen drought-tolerant barley genotypes Martin and Hordeum spontaneum 41-1 (HS41-1) and drought-sensitive genotype Moroc9-75 Hordeum vulgare
rice Affymetrix microarray dataset profiles expression patterns for different rice tissues and developmental stages Oryza sativa
most GT20 (trehalose synthases) members are highly expressed in most tissues and developmental stages Oryza sativa
clades of genes or individual genes in GT families exhibit varying expression from undetected to high Oryza sativa
semi-quantitative RT-PCR was performed first to verify results from microarray analyses Arabidopsis thaliana
Contig1223_at (HvPIP2;3) was among 140 most differentially expressed genes all >21,000 sequences on the chip Hordeum vulgare
heat maps with hierarchical clustering exhibited overlaps between nitrite-responsive genes in NT roots and genes with altered expression in untreated mEL5 roots Oryza sativa
gene expression estimates based on ten or more tiling array probes are highly robust Arabidopsis thaliana
other tissues (seed, leaf, root, seedling) deviated farther from overall mean, indicating substantial tissue-specific expression differences Panicum hallii
cluster 7 was most highly expressed in leaf and seed Panicum hallii
genes in AsTol6.2 region are expressed at 47% to 56%
Subtractive products may contain cDNA that are common to or have similar levels in all tissues Gossypium hirsutum
EST encoding a sucrose synthase better in detecting expression than RT-PCR Gossypium hirsutum
differentially expressed genes between inferior and superior spikelets were comprehensively analysed using DNA microarray Oryza sativa
nucleotide sequences corresponding to UGT73F2 and GmMT7 were used in BLASTN searches Glycine max
custom M. crystallinum NimbleGen oligonucleotide-based microarray represents 8455 genes Mesembryanthemum crystallinum
transcript analysis of all annotated sugar transporter genes examined sugar transporter gene expression in syncytia induced by H. schachtii Arabidopsis thaliana; Heterodera schachtii
128 cDNA clones (58 early, and 70 late) represent 92 unique gene functions Prunus dulcis
TM4 MeV Stand-Alone Client is used for hierarchical clustering and gene ontology analysis
10,346 EST sequences and previously reported pea ESTs were used to construct 12K oligonucleotide array Pisum sativum
cDNAs from fresh protoplasts used as driver for SSH library construction Gossypium hirsutum
SSH library clones were subjected to microarray analysis Citrus sinensis
differentially expressed genes responding to drought-related stresses were identified after short drought treatments Hordeum vulgare
symptom externalization time point was used in microarray analysis Vitis vinifera
20 out of 23 SSH-derived ESTs showed significant expression differences between fresh protoplasts and cultured protoplasts Gossypium hirsutum
cDNA clones from both libraries were randomly picked, PCR-amplified, and arrayed on glass slides Prunus dulcis
Arabidopsis database provides searchable microarray data for genes expressed in organs at developmental stages Arabidopsis thaliana
29 tandemly duplicated OsRLCK genes expression patterns analyzed for 14 groups of tandemly duplicated OsRLCK genes Oryza sativa
23 barley MIPs expression was analysed by qPCR Hordeum vulgare
10,346 EST sequences represent 7,610 unique genes Pisum sativum
qRT-PCR was done with RNA from flag leaves collected in 2010 at five stages of development Hordeum vulgare
both nucleic acid-binding protein genes on chromosome 6 are expressed according to array data
gene chips were hybridized with cDNA of root segments before infection and syncytia at 5 dai and 15 dai Arabidopsis thaliana
significantly regulated genes in 15 dai syncytia were analyzed by Affymetrix gene chips Arabidopsis thaliana
VvSWEET15 is highly expressed in berries after véraison Vitis vinifera
flag leaves collected from SN and HN plots in 2010 were used for expression analysis by quantitative real-time PCR (qRT-PCR) Hordeum vulgare
expression of group I and group III genes was more strongly affected by KNO2 treatment in mEL5 roots than in NT roots Oryza sativa
flag leaf at the heading stage was used in this study eQTL-guided co-expression analysis Oryza sativa
(AGP1, ATAGP1, AT5G64310) (AGP4, ATAGP4, JAGGER, AT5G10430) (AGP7, AT5G65390) (AGP9, AT2G14890) (AGP10, ATAGP10, AT4G09030) (AGP12, ATAGP12, AT3G13520) (AGP15, ATAGP15, AT5G11740) (AGP16, ATAGP16, AT2G46330) (AGP23, ATAGP23, AT3G57690) (AGP25, ATAGP25, AT5G18690) and (AGP26, ATAGP26, AT2G47930) were picked for further analysis Arabidopsis thaliana
tomato leaves treated with fusicoccin exhibit higher number of up-regulated genes than repressed genes Solanum lycopersicum
susceptible cultivar Cabernet-Sauvignon was used in microarray analysis Vitis vinifera
VvSWEET7 is highly expressed in berries after véraison Vitis vinifera
17003 genes showed statistical distribution of fold changes in expression levels Oryza sativa
AsTol6.1 candidate region has 252 genes with assigned probe sets
expression profiles generated from aleurone layer
7610 unigenes combined with approximately 3000 publically available pea EST sequences were used to construct 12K oligonucleotide array Pisum sativum
microarray was used to perform extensive analysis of transcript profile of pea SAM Pisum sativum
mycorrhizal transgenic roots analyzed by transcriptome analysis using Mt16kOLI1Plus microarrays Medicago truncatula
VvSWEET5b is highly expressed in flowers Vitis vinifera
VvSWEET11 is highly expressed in berries after véraison Vitis vinifera
VvSWEET17d is highly expressed in berries after véraison Vitis vinifera
2,4-D treatment at 12, 24, 48, and 72 (AMP1, AtAMP1, COP2, HPT, MFO1, PT, AT3G54720) differentially expresses 3413 probe sets Citrus sinensis
96 core cell-cycle genes are represented by (ATH1, AT4G32980) array probes Arabidopsis thaliana
AsTol10 candidate region has 78 genes without corresponding Affymetrix probe sets
array hybridized with cDNAs harvested at different time points Gossypium hirsutum
microarrays have been used for gene expression analysis in barley under drought or drought-related stresses Hordeum vulgare
Affymetrix Gene Chip Analysis is used to study large variety of expressed genes in various tissues
amplified RNA hybridized to Affymetrix 22K Barley GeneChips
poor quality RNA from paraffin sections is not suitable for RNA expression analysis
qPCR measured relative mRNA levels of lcy-β1 and lcy-β2 Carica papaya
Expression comparison between leaves and roots was conducted for combined expression in growing and mature tissue Hordeum vulgare
transcriptional profile is similar between (FTSH2, VAR2, AT2G30950) green sectors and Col Arabidopsis thaliana
microarray experiment was carried out using Affymetrix Arabidopsis (ATH1, AT4G32980) Genechips Arabidopsis thaliana
most other transcripts much more abundant in polyA(±) than polyA(+) samples emanate from transposons and pseudogenes Arabidopsis thaliana
tiling arrays combined with techniques for isolation of specific cells by laser microdissection or cell sorting might resolve transcriptional activity over developmental stages and cell types Arabidopsis thaliana
cluster 5 comprised genes preferentially expressed in seed Panicum hallii
31 genes in AsTol6.1 are differentially expressed between Azucena and Bala under control conditions
23 ESTs selected for RT-PCR except three ESTs (NAC, ATB2 and OSM), all the other ESTs selected gave the same expression pattern as revealed by macroarray Gossypium hirsutum
nine genes encoding transcription factors were identified by microarray analysis Citrus sinensis
1 gene in AsTol6.2 is differentially expressed between Azucena and Bala under control conditions
qPCR assays determined significant differences in transcript abundance between fruit samples Prunus persica
expression profiles of AGPs in Arabidopsis were obtained from microarray hybridization data sets Arabidopsis thaliana
RT-PCR analysis outcomes are in agreement with microarray data Pisum sativum
time was the most influential variable in time-course study
technical problems due to variation in Rorippa species gene sequences could affect detection of some genes with Arabidopsis (ATH1, AT4G32980) chips Rorippa amphibia; Rorippa sylvestris
principal component analysis (PCA) revealed high level of variation in transcriptome between conditions and time points
selected genes were also up-regulated in Cabernet-Sauvignon leaves infected by Erysiphe necator, Plasmopara viticola, and Botrytis cinerea Vitis vinifera
more than 97% of high-confidence exon predictions overlap at least 25 bp with annotated exons Arabidopsis thaliana
complete list of all high-confidence exons with chromosome start and end position can be downloaded from At-TAX homepage Arabidopsis thaliana
H/ACA-box small nucleolar RNA detected with large differences between polyA(+) and polyA(±) samples Arabidopsis thaliana
BLASTN searches of 330,436 soybean ESTs resulted in four matching ESTs for UGT73F2 Glycine max
gene on chromosome 10 annotated as NBS-LRR disease resistance protein is not expressed according to expression data
616 cDNA clones exhibited statistically significant differential expression
single-cell RNA sequencing (scRNA-seq) unravels cellular heterogeneity
(HUB1, RDO4, AT2G44950) over-expression lines were analyzed in Agilent microarray experiment Arabidopsis thaliana
quantitative differences in transcript levels between organs revealed dynamic transcriptome in switchgrass Panicum virgatum
27,137 probe sets detected in triticale anther is similar to 24,400 probe sets in maize Zea mays
Arabidopsis (ATH1, AT4G32980) GeneChip Affymetrix microarrays represents 22,810 genes Arabidopsis thaliana
gene expression atlas covering various tissues has been reported for model legumes soybean and Medicago Glycine max; Medicago truncatula
availability of the tomato genome sequence and annotation enables genome-wide assessment of whether a gene is expressed in the L1 or L2/L3 layers Solanum lycopersicum
transcriptome analysis of PsSOC1-OE buds was conducted using empty pBI121-transformed buds as control Paeonia suffruticosa
Roche 454-pyrosequencing was used to generate transcriptome data from phellogen Quercus suber
genomic analysis resulted in identification of numerous differentially expressed genes (DEGs)
(STP12, AT4G21480) is the most highly up-regulated gene identified by gene chip analysis Arabidopsis thaliana
candidates selected that were up-regulated when transcript profile of SAM was compared with RAM or NM were selected for further saturated RT-PCR analysis Pisum sativum
microarray experiment did not identify all genes with lower expression in (AtROS1, DML1, ROS1, AT2G36490) mutant Arabidopsis thaliana
(ASU1, ATDCL1, CAF, DCL1, EMB60, EMB76, SIN1, SUS1, AT1G01040) (AGO1, AtAGO1, ICU9, AT1G48410) (AGO2, AtAGO2, AT1G31280) and (AGO5, AtAGO5, AT2G27880) show expression in egg Arabidopsis thaliana
RNA-seq analysis identified changes in gene expression upon exposure to eBL Arabidopsis thaliana
online resource consists of web-tool and customized generic genome browser Arabidopsis thaliana
VvSWEET1 is mainly expressed in young and adult leaves Vitis vinifera
median (AIRP3, AtAIRP3, LOG2, AT3G09770) values of fold changes in group IV and group VI genes increased and decreased significantly, respectively, in untreated mEL5 roots Oryza sativa
gene expression was further altered after KNO2 treatment Oryza sativa
PCCs indicate comparable results from both platforms Arabidopsis thaliana
microarray result generated from healthy inflorescences may miss some NAT transcripts that are regulated by siRNAs at different developmental stage or under specific environmental conditions Arabidopsis thaliana
RNA-Seq analysis in Panicum hallii provides proof of concept for RNA-Seq analysis in Panicum hallii Panicum hallii
hierarchical clustering was used to identify sets of DEG associated with particular tissues Panicum hallii
biological processes affected by hub1-1 point mutation were common in two microarray datasets Arabidopsis thaliana
DEFLs are present on array Arabidopsis thaliana
genes encoding PAZ, Piwi, and DUF1785 domains are globally enriched in egg Arabidopsis thaliana
genes with low correlation between platforms tend to be those represented by comparably small number of tiling probes Arabidopsis thaliana
RNA sequencing (RNA-seq) enables large-scale analysis of gene activity
RNA-seq experiments showed remarkably high similarity between two cell types and two biological repeats Arabidopsis thaliana
RNA-seq analysis was performed on transcriptome of (ATEXP7, ATEXPA7, ATHEXP ALPHA 1.26, EXP7, EXPA7, AT1G12560) and non-GFP cells Arabidopsis thaliana
real-time quantitative (q)PCR analysis was performed for six selected genes Vitis vinifera
fold changes of the 17003 genes in KNO2-treated NT roots were classified into group IV (upregulated genes), group V (unchanged genes), and group VI (downregulated genes) Oryza sativa
mRNA expression profiles were compared using NimbleGen microarray 090818 Vitis exp HX12 chip Vitis vinifera
Rice DB provides transcript data Oryza sativa
'anther – pollen' dataset is probe sets detected in developing anther but not in isolated mature pollen grain (MPG)
genome-wide mRNA accumulation analysis identified flavonoid-responsive gene set Arabidopsis thaliana
differences in the RNA complement (transcriptome) are assessed between different tissue samples
comparative transcriptome analysis was performed between two cultivars ('Saiguifei' and 'Jingshenhuanfa') with different ALA contents Paeonia suffruticosa
36.1% of probe sets derived from other pooled genotypes detected AP13 transcripts Panicum virgatum
top 50 EC genes range from approximately 100,000 tpm down to 1,000 tpm Oryza sativa
Expression levels by QRT-PCR of three ESTs encoding (SMP1, AT3G12960) (C3HC4, AT5G19430) zinc finger family protein, and GRP of protoplasts cultured for 48 h differed from the trends of SSH analysis Gossypium hirsutum
LRR III subfamily registered 207 differential responses Arabidopsis thaliana
VvSWEET3 is highly expressed in flowers Vitis vinifera
transcriptome analysis on microtissue samples was performed on vascular and nonvascular regions of cotyledons Arabidopsis thaliana
expression levels of >99.93% of all genes represented on the chip are identical in WT and (AT-HSFB1, ATHSF4, HSF4, HSFB1, TBF1, AT4G36990) /B2b plants at 22°C
850 genes were up-regulated in processed shoots
root tip transcriptomes are analyzed by comparative RNA sequencing (RNA-seq) analysis Arabidopsis thaliana
450 genes were up-regulated in trichomes
(SIM, AT5G04470) showed 16.3-fold higher expression in trichomes
RankProduct method (RankProd) detected 2,484 and 2,294 differentially expressed genes Arabidopsis thaliana
transcripts detected for approximately two-thirds of all genes represented by probe sets on cDNA chip Panicum virgatum
VvSWEET17b expression not detected in different organs of Vitis vinifera 40024 Vitis vinifera
(ATEXT1, ATEXT4, EXT1, EXT4, ORG5, AT1G76930) gene was not detected to have substantial expression change in microarray experiment Arabidopsis thaliana
27,320 genes represented 91% of the genome
34 genes had expression detected in mature trichomes
expression of annotated rice genes was measured by quantifying number of RNA-Seq reads mapped to each gene locus and calculating FPKM value Oryza sativa
transcriptomic studies have focused on diploid sporophytic cell types
mix of locked nucleic acid (LNA) oligonucleotides used for rRNA depletion Arabidopsis thaliana
leaf tissue had 18,299 transcripts Panicum hallii
statistical comparisons based on negative binomial model for count data revealed large proportion of transcripts (n = 10,844) were differentially expressed among tissues Panicum hallii
hub1-1 mutant was compared with (HUB1, RDO4, AT2G44950) over-expression line Arabidopsis thaliana
13 536 probe sets designed from partial sequences representing 3′-end of transcripts 10 424 (77.1%) detected transcripts Panicum virgatum
normalized expression distances (d r ) calculated for 585 (RLK, AT5G67280) genes
12 genes encoding transcription factors had probesets on Affymetrix (ATH1, AT4G32980) GeneChip
3 genes encoding transcription factors were expressed at significantly higher level in trichomes vs. processed shoots
5.3 μg of total RNA is used for cDNA synthesis and labeling Hordeum vulgare
microarray samples are washed and imaged on GeneChip Fluids Station and GeneChip Scanner Hordeum vulgare
clasp-1 and wild-type root tips are transcriptomically distinct Arabidopsis thaliana
distinct clusters of coexpressed genes are identified Arabidopsis thaliana
segments totaling less than 100 kb identified as potential polyA(-) transcripts Arabidopsis thaliana
gene-expression levels requires accurate normalization for reliable results
20,583 genes represented on both (ATH1, AT4G32980) and tiling array platforms Arabidopsis thaliana
average expression levels of genes found only on the tiling array are clearly lower than average expression levels of genes present on both platforms Arabidopsis thaliana
R affy package is used for microarray data analysis
RNA-seq analysis was performed after treatment with ABA or osmostress Physcomitrella patens
roots and inflorescences compared for differential gene expression Arabidopsis thaliana
PCC of 0.92 indicates good agreement for detecting expression differences of individual genes across platforms Arabidopsis thaliana
more than 70% of all genes showed correlation of 0.8 or greater Arabidopsis thaliana
high-confidence segments found in at least one polyA(+) sample subtracted from segments found in both polyA(±) samples Arabidopsis thaliana
tiling arrays might be platform of choice to further resolve transcriptional activity Arabidopsis thaliana
transcripts 38% at ≤2 rpm Panicum hallii
most tissues had 0.04-0.9% tissue-specific transcripts Panicum hallii
Cluster 1 was most highly expressed in stem-associated tissues (crown, inflorescence, node, stem) Panicum hallii
annotated genes profiled for expression on tiling arrays Arabidopsis thaliana
real-time reverse transcription PCR (RT-PCR) is method of choice for gene-expression analysis
microarray analysis identified 1788 probe sets with statistically significant difference between control and ozone-treated groups Arabidopsis thaliana
'anther + pollen' dataset is probe sets detected during anther development and/or in mature pollen grain (MPG)
microarray analysis of LD spring1 and VLD R108 indicated that these genotypes generally share very similar global patterns of expression Medicago truncatula
14% to 31% of unannotated high-confidence predictions specifically detected in single sample Arabidopsis thaliana
ethanol-inducible TIMING OF CAB EXPRESSION 1 (APRR1, AtTOC1, PRR1, TOC1, AT5G61380) transgenic line was used in extensive microarray analysis Arabidopsis thaliana
mSTAD incorporated more flexible error model Arabidopsis thaliana
segments totaling less than 100 kb represent less than 0.1% of entire genome Arabidopsis thaliana
transfrag method led to similar estimates of polyA(±) specific transcribed fragments (transfrags) Arabidopsis thaliana
tight clustering of tissue types in three-dimensional plot indicates tissue type can be reliably predicted from expression profiles Panicum hallii
three triticale GDSL-like lipases showed anther-specific expression
genes first annotated as expressed in leaf and tuber tissue were based on expression abundances in the reference genotype DM1-3 Solanum tuberosum
lincRNAs and lncNATs overall expression levels significantly lower than PCgenes Ricinus communis
transcriptome of Rhizophagus irregularis DAOM197198 was investigated in three evolutionary distantly related plant species, Medicago truncatula, Nicotiana benthamiana and Allium schoenoprasum Rhizophagus irregularis; Medicago truncatula; Nicotiana benthamiana; Allium schoenoprasum
RNA-seq analysis was conducted in 3-day-old root hair isolated from wild-type and zmlrl5-1 plants Zea mays
(PIN6, AT1G77110) is nectary-enriched gene Arabidopsis thaliana
121 differentially expressed transcripts represent 29 unique gene sequences Vitis vinifera
tiling array has power to detect differential gene expression Arabidopsis thaliana
between 26% and 36% of remainder of high-confidence exon predictions do not overlap with annotated transcripts Arabidopsis thaliana
between 1,107 and 1,947 predicted high-confidence exons per sample neither included in current annotation Arabidopsis thaliana
between 1,107 and 1,947 predicted high-confidence exons per sample nor covered by sequenced cDNA clones Arabidopsis thaliana
transcripts detected in any tissue nearly half (n = 11,549) were ubiquitously expressed in all tissues Panicum hallii
expression profiles differed substantially between seed, leaf, and root relative to other tissues Panicum hallii
tissue-specific patterns were readily apparent in these data, with perfect clustering by sample type Panicum hallii
Agilent microarray experiment yielded higher number of differentially expressed genes Arabidopsis thaliana
RNA-seq was performed on flesh tissue of mature fruit (mesocarp) Cucumis melo
Transcriptomic studies of single cell types in plants have provided valuable information about gene expression in single cell types
SAGE and Affymetrix AG microarray studies have provided extent of overlap between male gametophytic and sporophytic gene expression Arabidopsis thaliana
mSTAD modeled spliced transcripts with ten discrete expression levels Arabidopsis thaliana
Gene sets involved in transcriptional, posttranscriptional, and epigenetic regulation, signaling, and cell wall modification are enriched in female gametophyte Arabidopsis thaliana
many genes absent from (ATH1, AT4G32980) are expressed more highly in at least one sample Arabidopsis thaliana
high-confidence predictions that do not overlap with known cDNAs or ESTs subset of 47 segments Arabidopsis thaliana
GeneChip® Arabidopsis Tiling 1.0R Array provides information on genes not represented on (ATH1, AT4G32980) Arabidopsis thaliana
present study endeavors to fill gap by cataloging genes expressed in multiple stages and tissues of Panicum hallii Panicum hallii
Cluster 2 comprised genes preferentially expressed in seedling Panicum hallii
three groups of transcription factors (TFs) are overrepresented in whole female gametophyte transcriptome Arabidopsis thaliana
overlaps of enriched functions in gametes of both lineages include 26 biological process groups, 26 molecular function groups, and three Pfam domain groups Arabidopsis thaliana; Homo sapiens
mSTAD exon predictions compared with annotated genes Arabidopsis thaliana
seed profiles included slightly higher fraction of tissue-specific transcripts (2.1%) Panicum hallii
parental line SE21s source organism for total RNA extraction Oryza sativa
differentially expressed tags defined by IDEG6 Oryza sativa
Eastern A. tauschii accessions (group II) differ in pattern of gene expression Aegilops tauschii
high-throughput transcriptome analyses used micro- and macroarrays
probe sets were constitutively expressed in each genotype
six DEFLs are predominantly expressed in central cell Arabidopsis thaliana
(AGL23, AT1G65360) has highest expression in female gametophyte Arabidopsis thaliana
genes selected for RT-PCR experiments represented various transcript levels and expression patterns during development Arabidopsis thaliana
samples converted to dsDNA hybridized to tiling arrays Arabidopsis thaliana
RNA sequencing (RNA-seq) of Fo-infected and uninfected Col-0 plants was performed at 1, 3, and 6 days post inoculation Arabidopsis thaliana
17 098 genes were analyzed pairwise comparison Arabidopsis thaliana
Agilent microarray data sets of barley analyzed during developmental leaf senescence are known two datasets Hordeum vulgare
dChip software is used for independent microarray data analysis
(KCBP, PKCBP, ZWI, AT5G65930) showed moderate but significantly higher expression in trichomes
University of Minnesota hybridization facility processed probes for (ATH1, AT4G32980) GeneChip hybridization
(CDC73, PHP, AT3G22590) mutant roots showed 519 differentially expressed genes Oryza sativa
Affymetrix (ATH1, AT4G32980) microarrays covering nearly 22 000 Arabidopsis genes employed in a different study Arabidopsis thaliana
Arabidopsis microarray data set were from plants submerged in dark conditions Arabidopsis thaliana
130 annotated core cell-cycle regulators identified 72 genes showing detectable expression in the SAM Arabidopsis
remaining genes in lipid metabolism group many of which display anther-specific expression
microarray data (Affymetrix) from root analysis was used to identify local coexpression domains Arabidopsis thaliana
orthologs of ERF group VII transcription factors could not be detected with Arabidopsis microarray GeneChip Rorippa amphibia; Rorippa sylvestris
expression values of short transcripts may be underestimated with random-primed hybridization targets Arabidopsis thaliana
tiling microarrays include strand-specific probes for every annotated maize chloroplast gene Zea mays
variance partitioning analysis (VPA) revealed high level of variation in transcriptome between conditions and time points
I-SAGE kit (Invitrogen) used for SAGE library construction Oryza sativa
(ERF74, RAP2.12, AT1G53910) was removed from data set during probe selection process Arabidopsis thaliana; Rorippa amphibia; Rorippa sylvestris
MH03g0764200 locus has gene expression levels in 20 tissues Oryza sativa
oligonucleotide microarray contains probes representing 14,997 rose assembled transcripts
line IDH4 transformants not characterized by massive global changes in gene expression
submergence experiments on Arabidopsis plants were repeated with conditions similar to Rorippa species microarrays Arabidopsis thaliana; Rorippa amphibia; Rorippa sylvestris
19 transcription factors (TFs) expressed throughout anther development displayed no anther-specific members or pollen development GO term
processed RNA was hybridized to (ATH1, AT4G32980) Affymetrix microarrays Arabidopsis thaliana
755 differentially expressed genes are analyzed by hierarchical clustering Hordeum vulgare
online resource created to make results easily accessible to research community Arabidopsis thaliana
first three components in PCA explain 53% of variance among samples ( (APC1, PC1, AT5G17480) = 23%, PC2 = 21%, PC3 = 9%) Panicum hallii
hub1-1 versus Landsberg erecta data were compared with Affymetrix microarray experiment data Arabidopsis thaliana
global transcriptional profiling yields expression-based gene annotations Triticum; Secale
protoplasts from Selaginella kraussiana root tip were collected and used for scRNA-seq (single-cell RNA sequencing) Selaginella kraussiana
double-stranded DNA (dsDNA) used as hybridization targets for tiling arrays Arabidopsis thaliana
priority during the (ATH1, AT4G32980) design given to genes with prior expression evidence Arabidopsis thaliana
inflorescences and senescing leaves showing highest proportion of sample-specific high-confidence predictions Arabidopsis thaliana
genes represented only on tiling array produced disproportionately high number with very low hybridization signals Arabidopsis thaliana
gene atlas approach provides important biological context for gene expression patterns
(HUB2, AT1G55250) gene was analyzed for expression by quantitative PCR Arabidopsis thaliana
72.9% of probe sets derived from AP13 sequences detected AP13 transcripts Panicum virgatum
microarray experiment identified 40 genes with altered expression in (AtMYB103, ATMYB80, MS188, MYB103, MYB80, AT5G56110) mutants Arabidopsis thaliana
anther developmental transcriptomes showed especially low correlation in comparisons involving mature pollen grain (MPG)
principal components analysis (PCA) separated genes with peak expression in flower bud/flower, egg cells, sperm cells and vegetative cells Oryza sativa
68% of the 497 experimentally confirmed rice mitochondrial proteins are expressed in >90% of all tissues Oryza sativa
genes encoding proteins predicted to be mitochondrial showed no significant enrichment for expression in >90% of all tissues Oryza sativa
microarray analysis identified EXPANSIN14 (ATEXP14, ATEXPA14, ATHEXP ALPHA 1.5, EXP14, EXPA14, AT5G56320) Arabidopsis thaliana
seven transcription factors belonging to (GAI, RGA2, AT1G14920) (RGA, RGA1, RGA24, AT2G01570) (SCR, SGR1, AT3G54220) (GRAS) family showed no enriched expression in anther
RNA-sequencing compared transcriptomes of wild-type and HDAC mutants at 20°C and 27°C Arabidopsis thaliana
selected genes were up-regulated in S + R + plants compared with S – R – plants in all conditions tested Vitis vinifera
foliar material distant from infection point was used in microarray analysis Vitis vinifera
expression of the subtilase gene in SN leaves differed in 2010 from the previous year Hordeum vulgare
high levels of (AGP23, ATAGP23, AT3G57690) expression in pollen grains was most probably responsible for prediction of (AGP23, ATAGP23, AT3G57690) expression in flowers and pistils from microarray data Arabidopsis thaliana
gene expression map data were consistent with Affymetrix microarray data of dividing Arabidopsis cell cultures Arabidopsis
reference potato genome expression atlas were obtained from Hardigan et al. (2016a) Solanum tuberosum
414 × Dul recombinant inbred line (RIL) population was analyzed by RNA-seq Cucumis melo
LOC_Os08g44250.1 is expressed in all tissues Oryza sativa
hierarchical expression clustering data summarize variations in expression among transcriptomes of various triticale reproductive organs
Massively Parallel Signature Sequencing repository expression data was used to identify local coexpression domains Arabidopsis thaliana
microarray studies identified 1,671 genes whose expression appears at least 2-fold enhanced in guard cells Arabidopsis thaliana
70-mer oligonucleotide probes had hybridization signals higher than or equivalent to PCR amplicons
Transcriptomic studies of single cell types in plants have not involved the use of Affymetrix (ATH1, AT4G32980) gene arrays Arabidopsis thaliana
4,939 transcripts lacking sequence similarity with known genes provided biological context for set of transcripts that could not be annotated based on sequence similarity alone Panicum hallii
Norway spruce needles were sampled transcriptome data Picea abies
RNA-seq identified FOXG_18438 Fusarium oxysporum
gene sets expressed in two stages were observed in eight clusters
subsets of genes expressed in different organs and tissues differed between organs Panicum virgatum
RNA was prepared, labeled, and hybridized to Affymetrix Arabidopsis (ATH1, AT4G32980) GeneChips® Arabidopsis thaliana
normalization method that was employed caused underrepresentation because values are represented as fraction of total chloroplast RNA rather than total leaf RNA Zea mays
identified DEGs in HFL1 at 10 DAF were classified according to physiological functions Oryza sativa
mRNA substrate for SAGE library construction Oryza sativa
microarray and bulk RNA-sequencing (RNA-seq) provide targeted and bulk gene expression information